Pairwise Alignments

Query, 884 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 818 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  553 bits (1424), Expect = e-161
 Identities = 344/885 (38%), Positives = 465/885 (52%), Gaps = 86/885 (9%)

Query: 1   MASDKLSTYKQKRDFQKTQEPSGAAKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW 60
           MA+ KL  Y++KRDF KT EP G      +   RFV+ KH AT  HYDLRLE+DGV KSW
Sbjct: 1   MATPKLEAYRKKRDFSKTPEPVGNL---TAGGNRFVVHKHHATADHYDLRLEVDGVLKSW 57

Query: 61  AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTPE 120
           AV KGPSL+P DKRLAVE EDHPLDY DFEG IP+G+YGGG +++WD+G W P G+   +
Sbjct: 58  AVPKGPSLNPADKRLAVETEDHPLDYIDFEGVIPEGEYGGGPMIVWDKGVWAPMGD--VD 115

Query: 121 QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEEKGAAVLDEN 180
             L KG FKF L GE+L+G ++L R++       + NWLL K RD     +    +L   
Sbjct: 116 DDLRKGAFKFRLAGEKLNGGWMLARLKRRPGEEDQRNWLLFKERD--PAADTSIDILAAR 173

Query: 181 DTSVASGRTMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERASDTKAKRKPAL 240
             SV SGR +E +       PKP  +  G                             AL
Sbjct: 174 PESVKSGRRIEELVEKPKAPPKPVKLNPG-----------------------------AL 204

Query: 241 KKPAKSTMPEFIPPQLCETLDRPPSA-------KGWIHEIKFDGYRIQTRIENGEVTLKT 293
               K+  PE I PQL      PP A       + W+HEIKFDGYR    + +G+V L T
Sbjct: 205 AGAVKAAQPERIEPQLATQTILPPEAEKDSKKPERWLHEIKFDGYRTMAHVADGKVRLVT 264

Query: 294 RKGLDWTAKYPAIATSAANLP--DAIIDGEICALDENGAPDFAALQAALSEGKTDELVYF 351
           R GLDWT +Y  +      LP  D IIDGEI  LDE G   FA LQ ALS G  + LV++
Sbjct: 265 RGGLDWTKRYGDLPEVFRRLPCRDVIIDGEIVVLDETGVSRFALLQDALSTGAGNSLVFY 324

Query: 352 AFDLLFEENEDLRQLPLTERKERLQTLL-DDAGEDPRLRFVEHFETGGDAVLKSACKLSL 410
           AFDLL     +L  +PL +RK  L+ LL         ++F +H    G A+   A ++ L
Sbjct: 325 AFDLLHLNGWNLFDVPLEKRKALLKQLLAGQVSSRSAIQFSDHVLGEGRALYDRASEMGL 384

Query: 411 EGIVSKQADAPYQSGRTETWAKSKCRAGHEVVIGAYAKTNGK--FRSLLVGVFKGDHFVY 468
           EGIVSK+  APY+SGR++TW K+K     + VI  Y  +       SL +G +      Y
Sbjct: 385 EGIVSKRISAPYRSGRSKTWTKTKALKAEDFVIVGYTVSEAAEGIASLALGEWADGELEY 444

Query: 469 VGRVGTGYGAKTVDTILPRLRELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAGWTA 528
            G+VGTG+ A+ +  +L RL  L    +     GAP++   ++WV+P L A I +   T 
Sbjct: 445 RGKVGTGFDAQMLKELLARLEPLRAGAAKLE--GAPRE---IIWVRPLLRAHIHYGNRTT 499

Query: 529 DGLVRQAAFKGLREDKPAHEVEAEKPASPAKTDTPTPAKSKPSRPARGKNAKAEVMGVMI 588
           D ++R A FKGLR      +VE   P S ++               +   + A++ G+ I
Sbjct: 500 DNVLRHAVFKGLR------DVELSTPVSMSR---------------KRLISDADLAGISI 538

Query: 589 SSPDKALWPDANDGEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEVFFQRH 648
           ++P + L+  +      TK DLA Y+  +G +++ HI GRP S++R P G   + FFQRH
Sbjct: 539 TNPTRRLFGKSGP----TKLDLAVYYAMIGDFMLPHILGRPVSLVRCPTGRTQDCFFQRH 594

Query: 649 ---AMPGTSNLIELVKVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPGQPEVPGRL 705
               MP +    +     G+ K YL ++   G  A+AQ G VE H W         P R+
Sbjct: 595 PFTGMPPSVATFQATNSEGEAKTYLSVEDARGYLALAQFGVVEFHNWGTTRKLLGKPDRV 654

Query: 706 VFDLDPGPDVPFSTVVEAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWP 765
           VFDLDPG  + +  VVEAA  ++  LE L LV F KT+GG+G+HVV P+ VP   KL W 
Sbjct: 655 VFDLDPGEGIAWREVVEAAIHIKAELEALALVPFVKTSGGRGVHVVVPV-VP---KLDWK 710

Query: 766 EAKGFAHDVCMQMARETPELYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARAGAP 825
           +       +  ++A   P  +   M K+ R  RIF+D+ RN R  T  AP S RAR   P
Sbjct: 711 KFHQATSALATRLAATAPATFTTTMGKDNRIRRIFIDFHRNARSHTWAAPYSLRARTNLP 770

Query: 826 VSMPLSWKQVKTDLDPKRFTIRTVPALLSKT-TAWQDYCDGQRSL 869
            S PLSW  ++T   P      ++P LL+ +   W D  D  R L
Sbjct: 771 ASTPLSWADLETIDAPADLNYSSLPGLLATSGDPWADIDDFARDL 815