Pairwise Alignments

Query, 298 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 293 a.a., Ku protein, prokaryotic from Pseudomonas stutzeri RCH2

 Score =  132 bits (331), Expect = 1e-35
 Identities = 84/295 (28%), Positives = 146/295 (49%), Gaps = 11/295 (3%)

Query: 4   PRANWKGFIKYGEVACPVALYTAASSSERIAFNTLNRKTGNRVKREFVDSETGDPVERDE 63
           PR  WKG + +G V  PVAL   A++ + I F+ L++++ +RV  + ++  TG+ ++ + 
Sbjct: 2   PRTIWKGAVSFGLVHIPVAL-VPATTRQGIDFDWLDKRSMDRVGYKRINKTTGEDIDSEN 60

Query: 64  QVKGYEVENGQYIILEPEEVAAAVPDSDKTLKIDAFIPCHEIDDVYFDKPYYLAPDKMGT 123
            VKG E E G Y+++  +E+ +A P + +T+ I AF+   +I  +Y D PYYL PD+ G 
Sbjct: 61  IVKGVEYEKGSYVVISDDEIKSAHPKATQTVDIVAFVDAKDISFLYIDTPYYLTPDRRGE 120

Query: 124 DAFLLLRDGMKKAKVAAIARTVLFRRVRTVLIRPHGKGLIATTLNFDYEVRSSQ--EAFE 181
             + LLR+ + +     IA  VL  +    ++ P GK L+  TL +  EVR  +  E  +
Sbjct: 121 KVYALLRETLIQTGKVGIANVVLRNKQHLAVVMPLGKALVMNTLRWADEVRGVEYLELKD 180

Query: 182 ELPDLKIEGEMLELAEHIIGTKKGSFDASAFDDRYEAAVAELVKAKIEGRALPKKKAPP- 240
           E  D  +    L++A+ ++      +    + D ++  + ELV+ K     L     P  
Sbjct: 181 EALDPDLAERELDMAKRLVEDMTEKWKPEQYKDTFQDQIMELVEKKAREGKLEAVGGPEE 240

Query: 241 -----ASKPSDLLQALRESAGVVAKAASKRTAANVNKGTSRQKVAKAAAAKTKSA 290
                ++   DL + L+ S  + AK    R A+  ++     K A A    T  A
Sbjct: 241 AVDRRSADVIDLTELLKRS--LAAKPGKARAASEDDEADDAPKKAPAKPKTTSKA 293