Pairwise Alignments

Query, 566 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score = 59.3 bits (142), Expect = 5e-13
 Identities = 80/324 (24%), Positives = 124/324 (38%), Gaps = 37/324 (11%)

Query: 7   PFVVSACAGSGKTKTAVHRVAAMQNRLTDRIGRILLLSFSNVAVETFQREYGMLVTNDKR 66
           P +V + AG+GKT+    R+A +      R  ++L ++F+N A    +   G +      
Sbjct: 42  PVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRAAREMRERAGAM------ 95

Query: 67  RIGPIVEIDTVDGF--LTKNLLRPHGHRVMGCDRCPFL-VDGREPFLKHFTVWDGSKPAR 123
            IGP+ E   +  F  L   +LR HG  V        L  D +   LK     +G    +
Sbjct: 96  -IGPMAEQVWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQILEAEGIDTKK 154

Query: 124 TADLRITMDGGKFSFRVGKWAGTAISRTPAVEA----------------LEKLGAVGAYT 167
                 T   G    +  K  G      PA +                  ++L  V A  
Sbjct: 155 W-----TPQAGMGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQRLAVVNAAD 209

Query: 168 HESARYWAYRLLNEVPFVLRAIARRYSHILVDEAQDIGTIHQALLEKISDAGAELSLIGD 227
                     +  + P VL   ++ + +ILVDE QD        L  ++     +  +GD
Sbjct: 210 FGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQYLWLRLLARGHGNICCVGD 269

Query: 228 VNQGIFEFTGA-TGDFLGNYHSRAGVTAKELNRNFRSVPSIVKIANQL----SGRKDEPD 282
            +Q I+ + GA  G+ L       G T   L RN+RS P+I+  A+ L     GR  +  
Sbjct: 270 DDQSIYSWRGAEVGNILRFEADFPGATVVRLERNYRSTPTILAAASGLIRHNKGRLGKDL 329

Query: 283 RAAP-DELSGAFYIAVDHDKRDEA 305
           RA   DE   A  +    D  +EA
Sbjct: 330 RAGEGDEAGDAVIVRGLWDGEEEA 353



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 485 LSTVHKVKGESLDGVMYVA-------SRSNIEEFLAGTKTENGKIGYVALTRARNVFVLA 537
           L T+H  KG   D V            R  ++E  A    E  ++ YV LTRAR   +++
Sbjct: 569 LMTLHAAKGLEFDTVFLPGWEEEIFPHRRALDENGAEALEEERRLAYVGLTRARKRAIIS 628