Pairwise Alignments

Query, 577 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 554 a.a., ATP-dependent endonuclease from Vibrio cholerae E7946 ATCC 55056

 Score = 61.6 bits (148), Expect = 8e-14
 Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 29/249 (11%)

Query: 277 LIVEEPEAHLHPQLQAVLLKYLSSIQNGVGERDVQVFVTSHSPNFASIADLNSIACLYEV 336
           LI+E+PE  LHP   A    +L  +        +Q  +T++S +      L+SI  L   
Sbjct: 295 LIIEDPEGRLHPTHLARAWSFLDLLP-------MQKILTTNSSDLLGAVPLHSIRRLVRK 347

Query: 337 DDNVASFHPGSVNFAKGKKEKLKRYLDVTRAELFFARRVIFVEGAAELLMVNLLATKAGF 396
            D   +      + ++ +  ++  ++   R+   FAR  + VEG  E+ + N LA + G+
Sbjct: 348 SDRTIATSVSQRSLSRDELRRIGFHIRFHRSGALFARCWLLVEGETEVWLFNELAHQCGY 407

Query: 397 DLRNHGISLISVEGLNFDSFMPLFGEAGIKIPVSVITDADPQIEDAGGKKTAHYPSSTEA 456
           +L   G+ +I        S + +    G  I   V+TD DP      GKK   Y ++   
Sbjct: 408 NLAAEGVHIIEFAQSGLKSLIKVARAFG--IDWHVVTDGDP-----AGKK---YSATVRG 457

Query: 457 IIVSDNTK-SMKALEDKYLKVFHGQKTFEYDFALEDQNRQAMLDALEDIHPVIAKNLRDV 515
           ++  D  +  +  L D+ ++ F     FEY F          L  +   HP+ AK +   
Sbjct: 458 LLGHDQERHRLTELPDRDIEHFLYSHGFEYFF--------KELVKIPHDHPIPAKKVVSK 509

Query: 516 VA---AEPD 521
           V    A+PD
Sbjct: 510 VLKKHAKPD 518



 Score = 41.6 bits (96), Expect = 8e-08
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 1  MHLASLKIKNFRRFSETTIKFKSGLNVIVGPNNIGKSAVVDALRSLLAGADDPYPRFTVD 60
          MHL  ++I  FR     ++ F   +  ++G N  GKS+++DAL  +L      YP FT+ 
Sbjct: 12 MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADGTLYP-FTLQ 69

Query: 61 DIHV 64
          D HV
Sbjct: 70 DFHV 73