Pairwise Alignments

Query, 577 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 626 a.a., ATP-dependent endonuclease from Methanococcus maripaludis S2

 Score = 65.9 bits (159), Expect = 5e-15
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 12/255 (4%)

Query: 135 SSSMLDNL-RSVYLPPLRDAEQGLRPSRNSQLSRLLHLLTDETGKEEVALHLKDLDAKLK 193
           ++S+  NL +S  +P  RD +  LR +  +   +LL   T     E +   LK+L  +  
Sbjct: 197 ANSLRGNLIQSAIIPSFRDPKDQLRINNYTWFGKLLKEYTKGRNGEGIKEALKNLATESN 256

Query: 194 ELQVLKDAQSAVSGRHETMLGERLAQVLNVGLTGSDFSKLAARLSLLVDTF--EIERNGL 251
             QV ++ Q +V   +  +     +  +       D     + L  + D F  E++  G 
Sbjct: 257 --QVFEELQKSVCNDNIQIAFPNTSFSVQYNPDPKDQDIYKSALIYVDDGFKSELKDKGS 314

Query: 252 GYNNLIFMAVVLSELSKNAEASFRSLIVEEPEAHLHPQLQAVLLKYLSSIQNGVGERDVQ 311
           G  + + + +    +   A  S   L +EEPE +LHP  + ++   LS     +GE + Q
Sbjct: 315 GIQSAMTIGLFNFYIKHIAHNSGSLLAIEEPELYLHPHGRRIISDRLSEF---IGEDENQ 371

Query: 312 VFVTSHSPNFASIADLNSIACLYEVDDNVASFHPGSVNFAKGKKEKLKRYLDVTRAELFF 371
           V +T+HSP F   A+ N    + + D + +  +    N  K ++  +K+      +E+FF
Sbjct: 372 VILTTHSPEFICCANENINLIVVKKDKSESKAYNLQFNDIKTRQILIKK----QNSEMFF 427

Query: 372 ARRVIFVEGAAELLM 386
           A  V+ VEGA + ++
Sbjct: 428 ADAVLLVEGADKYIL 442



 Score = 42.7 bits (99), Expect = 4e-08
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 1  MHLASLKIKNFRRFSETTIKFKSGLNVIVGPNNIGKSAVVDALRSLL 47
          ++L+ + I+N+R   E  + F  G NVIVG NN GKS ++ A+  +L
Sbjct: 1  LYLSKVHIENYRSIKELDLTFDQGKNVIVGKNNAGKSNIIKAIDIVL 47