Pairwise Alignments
Query, 1266 a.a., conjugation protein from Agrobacterium fabrum C58
Subject, 1539 a.a., TraA1 conjugal transfer protein from Sinorhizobium meliloti 1021
Score = 566 bits (1459), Expect = e-165
Identities = 456/1331 (34%), Positives = 641/1331 (48%), Gaps = 238/1331 (17%)
Query: 1 MAIYHLSTKPVSRSSGRSAVASAAYRCAVLLVNQRDGLVHDFTRKEGVA---HSEIVLPQ 57
MAI + + +SR +GRS V++AAYR +++++ G F+ + G + H E+ LP
Sbjct: 1 MAIMFVRAQVISRGAGRSIVSAAAYRHRARMIDEQAGT--SFSYRGGASELVHEELALPD 58
Query: 58 GVSAGW---ALD-------RSTLWNAAEFAEKRKDARVAREFEIALPHELSPEGRLKAAR 107
+ A W A+D LWNA E E R DA++ARE IALP EL+ + R
Sbjct: 59 DIPA-WLRAAIDGRSVAKASEALWNAVEAHETRADAQLARELIIALPEELTRAENIALVR 117
Query: 108 AFAQDLANRYGAAVDFAIHSPSEHGDIRNHHAHVLMTTRQVGKAGLGEKTCL-------- 159
F +D G D+ H N H H++ R + + G G K
Sbjct: 118 EFVRDNLTSKGMVADWVYHDKDG-----NPHIHLMTALRPLTEQGFGPKKVPVLGEDGEP 172
Query: 160 ------EHKNARLLANGMATTDMQLRDIRQSWEGIANRQLQHEGLDVRIDHRSHIERGLE 213
+ N +++ A ++ + +W ANR L G ++R+D RS+ E+GL+
Sbjct: 173 LRVITPDRPNGKIVYKLWAGDKETIKAWKIAWAETANRHLALAGHEIRLDGRSYAEQGLD 232
Query: 214 LSPTEHMGVHASQMRQQGMAVERGRLDDEAARQNAALIRQKPEQVLTLISHEKSVFDRHD 273
+H+G + + ++G+A+ D ++ A + +P +L + +E+S FD D
Sbjct: 233 GIAQKHLGPEKAALARKGIAMYFAPADLARRQEMADRLLAEPGLLLKQLGNERSTFDERD 292
Query: 274 IAKTLHRYINDDAQTFQNAFAAVLASSALVELQAERIDPGTGKVSN-ARYSTREMIDLEL 332
IAK LHRY+ DD F N A ++AS LV L+ ++ID TGK A ++TREM+ LE
Sbjct: 293 IAKALHRYV-DDPVDFANIRARLMASDELVLLKPQQIDAETGKAKQPAVFTTREMLRLEY 351
Query: 333 AMARSAVRLHQAQSHGVDPRHVDRAIERQDRSLRRSSGGMLAASDPSAGLSDEQRHAIKH 392
AMARSA L + + GV A+ RS+ A ++ L EQ A++H
Sbjct: 352 AMARSAEVLSRRKGFGVSNARAAAAV----RSIET------ADTEKPFRLDPEQVDAVRH 401
Query: 393 ITGSERIAVVVGFAGAGKSTMLTAARKAWEAQGYQVHGAALSGKAAEGLEESSGIESRTL 452
+T IA VVG AGAGKST+L AAR AWE +G +V GAAL+GKAAEGLE+SSGI SRTL
Sbjct: 402 VTRDNAIAAVVGLAGAGKSTLLAAARAAWEGEGRRVIGAALAGKAAEGLEDSSGIRSRTL 461
Query: 453 ASWSYSWDQGRNLIGSSDLFVIDEAGMVGSRQLARFIGEAEERGAKIVLVGDHEQLQAIG 512
ASW +W+ GR + D+ VIDEAGMV S+Q+AR + E+ GAK VLVGD QLQ I
Sbjct: 462 ASWELAWENGREQLNRGDVLVIDEAGMVSSQQMARVLKAVEDAGAKAVLVGDAMQLQPIE 521
Query: 513 AGAPFRAIAEQIGHVELSGIRRQRHDWQRQASVAFATHKTAEGLAAYRDHGDIHFAESRD 572
AGA FRAI+E+IG EL+G+RRQR W R AS FA K EGL AY G I E+R
Sbjct: 522 AGAAFRAISERIGFAELAGVRRQRDAWARDASRLFARGKVEEGLDAYAQQGRIVETETRA 581
Query: 573 AAMAQIVRDYIDDN----EKRPDGTR---------VAMAHRRADVRALNATIRSELQNRQ 619
+ +IV D+ D +K DG + +AH DVR LN +R+ +
Sbjct: 582 EIVDRIVADWADARRDLLQKSADGEHPGRLRGDELLVLAHTNDDVRKLNEALRNVM---- 637
Query: 620 RLERSLGLSDGPDRGDRGDVEDRGNSGDVAELTFQTSNGKRAFASGDRIIFLEN------ 673
+ +G G R FQT+ G R FA+GDRIIFLEN
Sbjct: 638 -------IGEGALAGAR---------------EFQTARGLREFAAGDRIIFLENARFVEP 675
Query: 674 -NRDLG---VKNGMLGTVEDVEKGR----IVARLDGRGGDSVSIPTDSYQAIDHGYATTI 725
R LG VKNGMLGT+ R + RLD G V I DSY+ +DHGYA TI
Sbjct: 676 RARRLGPQYVKNGMLGTIVSTGDRRGDTLLSVRLD--SGRDVVISQDSYRNVDHGYAATI 733
Query: 726 HKNQGATVDRAFVLASSTMDRHLAYVAMTRHRDSVQLYADIKEFTS-------------- 771
HK+QG+TVDR FVLA+ MD+HL YVAMTRHRD LYA ++F +
Sbjct: 734 HKSQGSTVDRTFVLATGMMDQHLTYVAMTRHRDRADLYAAKEDFEAKPEWGRKPRVDHAA 793
Query: 772 --AGRLVDHGVAPYEHN-RRARENYFVTLENDKGERHTVWGVDLNRAMRDASPAIGDKIG 828
G LV G+A + N A E+ + + D G +WGV L +A++DA A GD I
Sbjct: 794 GVTGELVKEGMAKFRPNDEDADESPYADIRTDDGTVQRLWGVSLPKALKDAGVAEGDTIT 853
Query: 829 LQHVGATPVTLP-------------DGTKAERNAWRVVKGEELA---------------Y 860
L+ G V + + + +RN W + E A +
Sbjct: 854 LRKDGVERVKVQVPIVDAQTGEKRFEERQVDRNVWSASQLETAAARQERIERESHRPQLF 913
Query: 861 QKLASRLSRSGAKETTLDYISE---------FAERRGIASDPRIAGDQGIADQLGLKSEI 911
++L RLSRSGAK TTLD+ E FA RRG+ +
Sbjct: 914 KQLVERLSRSGAKTTTLDFEDEAGYQAQARDFARRRGL-------------------YHL 954
Query: 912 ELASARKDRQEVLSRAAHLQREQQDRPSERQQVYE--ERAGDLAGPVRRGHPRSPFARDI 969
L +A + EVL R A + +R+QV + ERA G FA
Sbjct: 955 SLVAAGME-AEVLRRWAGI-------AEKREQVAKLWERASVALG----------FA--- 993
Query: 970 DEGQQDDRAEETNRYRRIRWSDLMSQDGAVPPPTETVGQQSSLETGRPTP---LVPAITR 1026
R RR+ +++ TET L TG P+ LVP T
Sbjct: 994 -----------IERERRVAYNE---------ERTET------LSTGIPSDGKYLVPPTTT 1027
Query: 1027 YQRSIEEVAQQRALSVIDQQFDTVESLVR----RVFRDPAEVAARLRAAMTEKEGNGKIM 1082
+ RS+ E A+ LS Q++ E++V +++RDP A L A ++ + +
Sbjct: 1028 FSRSVAEDARLAQLS--SQRWKEREAIVHPVLAKIYRDPDGALAALNALASDAAIEPRKL 1085
Query: 1083 AKAMAGQPERFGELRGESGLFGSNKERKEALQYARSLSAHIGYV-SEAWERRLGEERQS- 1140
A+ + P+R G LRG + R E +LS + + A E R ER
Sbjct: 1086 AEDLGKAPDRLGRLRGSELVVDGRAARDERTAATVALSELLPLARAHATEFRRNAERFGI 1145
Query: 1141 EQWQREQRDVIEVPGLTPRSAEILAKVEEMQVEKRG--KFIKDLRSSAEGQAALDEARQV 1198
+ QR + VP L+ + L ++E ++ E+ G + + E + + E + V
Sbjct: 1146 REQQRRAHMALSVPALSKTAMARLVEIEAVR-EQGGDDAYRTAFTYAVEDRLLVQEVKAV 1204
Query: 1199 ADALTRRFGSS 1209
+ALT RFG S
Sbjct: 1205 NEALTARFGWS 1215
Score = 70.9 bits (172), Expect = 8e-16
Identities = 70/262 (26%), Positives = 121/262 (46%), Gaps = 45/262 (17%)
Query: 1010 SSLETGRPT----PLVPAITRYQRSIEEVAQQRALSV---IDQQFDTVESLVRRVFRDPA 1062
+S+E G+ T P++ A+T ++ +++E A++RAL+ + VE+ RV+RDPA
Sbjct: 1274 ASVELGKETFAVLPMLAAVTEFKTTVDEEARERALAAPHYAHHRAALVET-ATRVWRDPA 1332
Query: 1063 EVAARLRAAMTEKEGNGKIMAKAMAGQPERFGELRGE----SGLFGSNKERKEALQYA-- 1116
+ ++ + K G+ +A A++ P +G LRG L +ERK ALQ
Sbjct: 1333 DAIGKIEDLIV-KGFAGERIAAAVSNDPAAYGALRGSDRIMDKLLAVGRERKGALQAVPE 1391
Query: 1117 -----RSLSAHIGYVSEAWERRLGEERQSEQWQREQRDVIEVPGLTPRSAEILAKVEEMQ 1171
RSL A +A R + EER +R + +PGL+P + + L ++
Sbjct: 1392 AASRIRSLGASYASALDAETRGITEER--------RRMAVAIPGLSPAAEDALKRLAAQI 1443
Query: 1172 VEKRGKFIKDLRSSAEGQAALDEARQVADALTRRFG---------------SSDPRRFAE 1216
K GK D+ + + E +V+ AL +RFG S RR E
Sbjct: 1444 KNKDGKL--DVAAGSLDPHIAREFAKVSRALDQRFGRNAILRGETDVINRVSPAQRRAFE 1501
Query: 1217 ELEARPELAKQAEQIQTIARMV 1238
+ R + +QA ++Q+ ++
Sbjct: 1502 AMRDRLTILQQAVRVQSSQEII 1523