Pairwise Alignments
Query, 1266 a.a., conjugation protein from Agrobacterium fabrum C58
Subject, 1539 a.a., conjugal transfer protein from Sinorhizobium meliloti 1021
Score = 558 bits (1438), Expect = e-162
Identities = 453/1332 (34%), Positives = 637/1332 (47%), Gaps = 240/1332 (18%)
Query: 1 MAIYHLSTKPVSRSSGRSAVASAAYRCAVLLVNQRDGLVHDFTRKEGVA---HSEIVLPQ 57
MAI + + + R +GRS V++AAYR +++++ G F+ + G + H E+ LP
Sbjct: 1 MAIMFVRAQVIGRGAGRSIVSAAAYRHRTRMIDEQAGT--SFSYRGGASELVHEELALPD 58
Query: 58 GVSAGW----------ALDRSTLWNAAEFAEKRKDARVAREFEIALPHELSPEGRLKAAR 107
+ A W A LWNA E E R DA++ARE IALP EL+ + R
Sbjct: 59 DIPA-WLKAAIAGRSVAKASEALWNAVEAHETRADAQLARELIIALPEELTRAENIALVR 117
Query: 108 AFAQDLANRYGAAVDFAIHSPSEHGDIRNHHAHVLMTTRQVGKAGLGEK----------- 156
F +D G D+ H N H H++ R + + G G K
Sbjct: 118 EFVRDNLTSKGMVADWVYHDKDG-----NPHIHLMTALRPLTEQGFGPKKVPVLGEDGEP 172
Query: 157 ---TCLEHKNARLLANGMATTDMQLRDIRQSWEGIANRQLQHEGLDVRIDHRSHIERGLE 213
+ N +++ A ++ + +W ANR L G ++R+D RS+ E+GL+
Sbjct: 173 LRVVTPDRPNGKIVYKLWAGDKETIKAWKIAWAETANRHLALAGHEIRLDGRSYAEQGLD 232
Query: 214 LSPTEHMGVHASQMRQQGMAVERGRLDDEAARQNAALIRQKPEQVLTLISHEKSVFDRHD 273
+H+G + + ++G+A+ D ++ A + +P +L + +E+S FD D
Sbjct: 233 GIAQKHLGPEKAALARKGIAMYFAPADLARRQEMADRLLAEPGLLLKQLGNERSTFDERD 292
Query: 274 IAKTLHRYINDDAQTFQNAFAAVLASSALVELQAERIDPGTGKVSN-ARYSTREMIDLEL 332
IAK LHRY+ DD F N A ++AS LV L+ ++ID TGK A ++TREM+ LE
Sbjct: 293 IAKALHRYV-DDPVDFANIRARLMASDELVLLKPQQIDAETGKAKQPAVFTTREMLRLEY 351
Query: 333 AMARSAVRLHQAQSHGVDPRHVDRAIERQDRSLRRSSGGMLAASDPSAGLSDEQRHAIKH 392
AMA+SA L + + GV A+ RS+ A ++ L EQ A++H
Sbjct: 352 AMAQSAEVLSRRKGFGVSNARAAAAV----RSIET------ADTEKPFRLDLEQVDAVRH 401
Query: 393 ITGSERIAVVVGFAGAGKSTMLTAARKAWEAQGYQVHGAALSGKAAEGLEESSGIESRTL 452
+T IA VVG AGAGKST+L AAR AWE +G +V GAAL+GKAAEGLE+SSGI SRTL
Sbjct: 402 VTRDNAIAAVVGLAGAGKSTLLAAARAAWEGEGRRVIGAALAGKAAEGLEDSSGIRSRTL 461
Query: 453 ASWSYSWDQGRNLIGSSDLFVIDEAGMVGSRQLARFIGEAEERGAKIVLVGDHEQLQAIG 512
ASW +W+ GR + D+ VIDEAGMV S+Q+AR + E+ GAK VLVGD QLQ I
Sbjct: 462 ASWELAWESGREQLQRGDVLVIDEAGMVSSQQMARVLKAVEDAGAKAVLVGDAMQLQPIE 521
Query: 513 AGAPFRAIAEQIGHVELSGIRRQRHDWQRQASVAFATHKTAEGLAAYRDHGDIHFAESRD 572
AGA FRAI+E+IG EL+G+RRQR W R AS FA K EGL AY G I E+R
Sbjct: 522 AGAAFRAISERIGFAELAGVRRQRDAWARDASRLFARGKVEEGLDAYAQQGRIVETETRA 581
Query: 573 AAMAQIVRDYI----DDNEKRPDGTR---------VAMAHRRADVRALNATIRSELQNRQ 619
+ +IV D+ D +K DG + +AH DVR LN +R+ +
Sbjct: 582 EIVDRIVADWANARRDLLQKSADGEHPGRLRGDELLVLAHTNDDVRKLNEALRNVM---- 637
Query: 620 RLERSLGLSDGPDRGDRGDVEDRGNSGDVAELTFQTSNGKRAFASGDRIIFLEN------ 673
+ +G G R FQT+ G R FA+GDRIIFLEN
Sbjct: 638 -------IGEGALTGAR---------------EFQTARGLREFAAGDRIIFLENARFVEP 675
Query: 674 -NRDLG---VKNGMLGTVEDVEKGR----IVARLDGRGGDSVSIPTDSYQAIDHGYATTI 725
R LG VKNGMLGTV R + RLD G V I DSY+ +DHGYA TI
Sbjct: 676 RARRLGPQYVKNGMLGTVVSTGDRRGDTLLSVRLD--SGRDVVISQDSYRNVDHGYAATI 733
Query: 726 HKNQGATVDRAFVLASSTMDRHLAYVAMTRHRDSVQLYADIKEFTS-------------- 771
HK+QG+TVDR FVLA+ MD+HL YVAMTRHRD LYA ++F
Sbjct: 734 HKSQGSTVDRTFVLATGMMDQHLTYVAMTRHRDRADLYAAKEDFEPKPEWGRKPRVDHAA 793
Query: 772 --AGRLVDHGVAPYEHN-RRARENYFVTLENDKGERHTVWGVDLNRAMRDASPAIGDKIG 828
G LV+ G+A + N A E+ + + D G +WGV L +A++DA A GD I
Sbjct: 794 GVTGELVEEGMAKFRPNDEDADESPYADIRTDDGTVQRLWGVSLPKALKDAGAAEGDTIT 853
Query: 829 LQHVGATPVTLP-------------DGTKAERNAWRVVKGEELA---------------Y 860
L+ G V + + + +RN W + E A +
Sbjct: 854 LRKDGVERVKVQVPIVDEQTGEKRFEERQVDRNVWSASQLETAAARRERIERESHRPQLF 913
Query: 861 QKLASRLSRSGAKETTLDYISE---------FAERRGIASDPRIAGDQGIADQLGLKSEI 911
++L RLSRSGAK TTLD+ E FA RRG+ +
Sbjct: 914 KQLVERLSRSGAKTTTLDFEGEAGYQAQARDFARRRGL-------------------YHL 954
Query: 912 ELASARKDRQEVLSRAAHLQREQQDRPSERQQVYE--ERAGDLAGPVRRGHPRSPFARDI 969
L +A + EVL R A + +R+QV + ERA G FA
Sbjct: 955 SLVAAGME-AEVLRRWAGI-------AEKREQVAKLWERASVALG----------FA--- 993
Query: 970 DEGQQDDRAEETNRYRRIRWSDLMSQDGAVPPPTETVGQQSSLETGRPTP---LVPAITR 1026
R RR+ +++ TET L TG P+ LVP T
Sbjct: 994 -----------IERERRVSYNE---------ERTET------LSTGIPSDGKYLVPPTTT 1027
Query: 1027 YQRSIEEVAQQRALSVIDQQFDTVESLVR----RVFRDPAEVAARLRAAMTEKEGNGKIM 1082
+ RS+ E A+ LS Q++ E+++ +++RDP + L A ++ + +
Sbjct: 1028 FSRSVAEDARLAQLS--SQRWKEREAILHPVLAKIYRDPDGALSALNALASDAAIEPRKL 1085
Query: 1083 AKAMAGQPERFGELRGESGLFGSNKERKEALQYARSLSAHIGYV-SEAWERRLGEERQS- 1140
A+ + P+R G LRG + R E +LS + + A E R ER
Sbjct: 1086 AEDLGLAPDRLGRLRGSELVVDGRAARDERTAATVALSELLPLARAHATEFRRNAERFGI 1145
Query: 1141 EQWQREQRDVIEVPGLTPRSAEILAKVEEMQVEKRG---KFIKDLRSSAEGQAALDEARQ 1197
+ QR + VP L+ + L ++E V K+G + + E + + E +
Sbjct: 1146 REQQRRAHMALSVPALSKTAMARLVEIE--AVRKQGGDDAYRTAFAFAVEDRLLVQEVKA 1203
Query: 1198 VADALTRRFGSS 1209
V +ALT RFG S
Sbjct: 1204 VNEALTARFGWS 1215
Score = 74.3 bits (181), Expect = 8e-17
Identities = 71/279 (25%), Positives = 130/279 (46%), Gaps = 41/279 (14%)
Query: 1010 SSLETGRPT----PLVPAITRYQRSIEEVAQQRALSV---IDQQFDTVESLVRRVFRDPA 1062
+S+E G+ T P++ A+T ++ +++E A++RAL+ + VE+ RV+RDPA
Sbjct: 1274 ASVELGKGTFAVLPMLAAVTEFKTTVDEEARERALAAPHYAHHRAALVET-ATRVWRDPA 1332
Query: 1063 EVAARLRAAMTEKEGNGKIMAKAMAGQPERFGELRGE----SGLFGSNKERKEALQYARS 1118
+ ++ + + +I A A+ P +G LRG L +ERK ALQ
Sbjct: 1333 DAIGKIEDLIVKGFAAERI-AAAVTNDPAAYGALRGSDRIMDKLLAVGRERKGALQAVPE 1391
Query: 1119 LSAHIGYVSEAWERRLGEERQSEQWQREQRDVIEVPGLTPRSAEILAKVEEMQVEKRGKF 1178
++ I + ++ L E +S +R +R + +PGL+P + + L ++ K GK
Sbjct: 1392 AASRIRSLGASYASALDAETRSITEER-RRMAVAIPGLSPAAEDALKRLAAQIKNKDGKL 1450
Query: 1179 IKDLRSSAEGQAALDEARQVADALTRRFG---------------SSDPRRFAEELEARPE 1223
D+ + + E +V+ AL RFG S RR E + R
Sbjct: 1451 --DVAAGSLDPRIAREFAKVSRALDERFGRNAILRGETDVINRVSPAQRRAFEAMRDRLT 1508
Query: 1224 LAKQAEQIQTIARMVHRTRHAELSHDYALKRQLNRSQGL 1262
+ +QA ++Q+ ++V R +R +N+S+G+
Sbjct: 1509 ILQQAVRVQSSEKIVSERR----------QRAINQSRGI 1537