Pairwise Alignments

Query, 325 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  152 bits (384), Expect = 1e-41
 Identities = 100/320 (31%), Positives = 170/320 (53%), Gaps = 18/320 (5%)

Query: 2   KFLKSTEFIIA----CVLLAAMIIIGLINPAFWSLDNIFGLLRSNVVIGIMALGVLLVMI 57
           K L S E++I       LL  ++++  +NP F+++DN+  +LR   V  I+A+G+ LV++
Sbjct: 21  KKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVIL 80

Query: 58  SGGIDVSFTAFAIAAMYLTVRSMVYLGYDGVLIPFVAATLIGLVLGAFNGLIIHRFRMIP 117
           + GID+S  +  + A+     + +      VL+    A L G  LGA +G+II + ++  
Sbjct: 81  TAGIDLSVGS--VLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQA 138

Query: 118 LIVTLGTGSIVRGLVLGLVGTSIVNINKMPKELIEFGKTDVISLTS--ATGSTFGLTAMF 175
            I TL T +++RG+ +       V  +  P   I  G TD     +   TG T G+    
Sbjct: 139 FIATLVTMTLLRGVTM-------VYTDGRP---ISTGFTDTADTFAWFGTGYTLGIPVPV 188

Query: 176 LVYLGLALVIHLILTYTMIGRSVYAYGGSPEAAKRVGFNTGATIFFVYCIAGALAGFSGL 235
            + + +      +L +T  GR VYA GG+  A +  G N       VY I G LA  +G+
Sbjct: 189 WLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGI 248

Query: 236 LHSSMIWLANPRDFVGLELDVIAAVVLGGASIFGGRGTVLGTLMGVFMLVMVKNSLIIMK 295
           + +S +  A P   +G ELD IAAVVLGG S+ GG+G ++GTL+G  ++  + N+L ++ 
Sbjct: 249 IVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLD 308

Query: 296 VDTTWQRVVVGLIIIIATAI 315
           V + +Q +   ++I++A  +
Sbjct: 309 VSSYYQMIAKAVVILLAVLV 328