Pairwise Alignments

Query, 336 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

Subject, 333 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) from Phaeobacter inhibens DSM 17395

 Score =  107 bits (267), Expect = 4e-28
 Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 2/250 (0%)

Query: 42  HPMNIRAKEAAERIAKETDGQVNISIFPSSQLGADTDVLSQVRSGGVEFFTLSPLILSTL 101
           HP  I A    +RI +E +G + + ++P+S L  D  VL  +  G V+    S       
Sbjct: 42  HPKGIAASLLEKRINEEMNGTMCLEVYPNSTLYNDNKVLEAMLQGDVQLAAPSLSKFEKF 101

Query: 102 IPNASISGIGFAFPNYESVWAAMDGDLGKYVRGEIAKQNLVAMDTIWDNGFRQITSASKP 161
                +  + F F N ++V A    + G+ +   + ++ L  + + W NG +Q+ SA+KP
Sbjct: 102 TKQFRLFDLPFMFKNIDAVDAFQGSENGQAMLDSMQRRGLQGL-SYWHNGMKQM-SANKP 159

Query: 162 IATPADLESFKIRVPVSPLWTSMFKAFKSAPASINFAEVYTALQTGVVDGQENPLAIIST 221
           +  P+D    K RV  S +  +  +A   +P  + F+EVY ALQ GVVDGQEN  + I  
Sbjct: 160 LINPSDANGLKFRVQSSDVLVAQMEAIGGSPQKMAFSEVYGALQQGVVDGQENTWSNIYG 219

Query: 222 AKLFEVQKFCSVTNHMWDGFWFLANKRAWERLPDDLRAIVAKNLNQSGKDERADVAKLNA 281
            K FEVQ   + TNH    +  + +    + L   +R      L +      ++  K+NA
Sbjct: 220 KKFFEVQDGVTETNHGALDYLVVTSVDWLDSLDPAVREQFLTILGEVTATRNSESTKVNA 279

Query: 282 SVKEDLISKG 291
             ++ +I  G
Sbjct: 280 EARQSIIDAG 289