Pairwise Alignments

Query, 338 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (359), Expect = 9e-39
 Identities = 89/308 (28%), Positives = 155/308 (50%), Gaps = 23/308 (7%)

Query: 15  LVVMVLLCTGLSFATDRFLTISNAFDVLNVSAVNIIFAVGLLVVLISGGIDISF-AVAAS 73
           L+ ++ L   +SF    F T+ N  ++L  ++VN I AVG+ +V+++ GID+S  +V A 
Sbjct: 35  LIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94

Query: 74  VVQYVTVLALNALGGGNWAEGFIIAGAVGLSLGFVNAFLVWRLNIISIVATISTFNIFFG 133
              +   L    +         ++AGA   +LG ++  ++ +  + + +AT+ T  +  G
Sbjct: 95  CGAFAATLVAMEVPVLVAVPTALLAGA---ALGAISGIIIAKGKVQAFIATLVTMTLLRG 151

Query: 134 LLMFFTKGVSIY-------DLPEWLSTRVVFYEREMPDGSWVELTLPVVVMILCCVATWF 186
           + M +T G  I        D   W  T           G  + + +PV +M++     W+
Sbjct: 152 VTMVYTDGRPISTGFTDTADTFAWFGT-----------GYTLGIPVPVWLMVVVFAGAWY 200

Query: 187 MISRTTVGRKLYAFGDNPEGARRFGINIGAMHYISFGWLGLMAGIAGLMQAHYAQEVVPN 246
           +++ T  GR +YA G N    R  GIN+  +    +   GL+A +AG++         P 
Sbjct: 201 LLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPT 260

Query: 247 ALYGRELDVLAATVLGGARLGGGKGSVIGCVLGVLMVSITQNGLNLMGVSPFAFKMIVGA 306
           A  G ELD +AA VLGG  L GGKG ++G ++G L++    N LNL+ VS + ++MI  A
Sbjct: 261 AGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSY-YQMIAKA 319

Query: 307 IILVAITL 314
           ++++   L
Sbjct: 320 VVILLAVL 327