Pairwise Alignments

Query, 496 a.a., sugar ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  338 bits (868), Expect = 2e-97
 Identities = 193/479 (40%), Positives = 290/479 (60%), Gaps = 6/479 (1%)

Query: 4   EPLLSLKNVKVTFGGVRALKGVSFEVNPGEVHCLAGENGCGKSTVIKVITGVYKPESDAE 63
           + +L+L  ++  F GV+AL   S  V PG V  L GENG GKST++KV+TG+Y  ++ + 
Sbjct: 3   QAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGS- 61

Query: 64  LYFDGKPIAAMTPTLAQSLGIQVIWQDLALFDEMTVAENIGFQYAVNGRFGLVDKRAIKN 123
           + + G+P++   P  +Q  GI +I Q+L L  ++T+AENI     +   FG +    +  
Sbjct: 62  IEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHR 121

Query: 124 AAEKALARLGVSFDLDRPLKELPIAQRQIVAIARALVGEARLVFMDEPTASLTQSETDYL 183
            A++ LARL V       L EL + ++Q+V IA+AL  E++++ MDEPT +LT +ET+ L
Sbjct: 122 KADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESL 181

Query: 184 IDIVRNLSASGVAVVFVSHRLAEVLEISDRITVLRDGSLVGVFPVEGMTQSRVTELMTGR 243
            +++  L   G  +V++SHRL E+ EI D ITVLRDG  +G   V    +  + E+M GR
Sbjct: 182 FNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGR 241

Query: 244 NFDSAV--IAADHDDKPVVLSVRGLTRAGEFEDVSFDLRRGETLGITGLLGAGRTELALT 301
             +     IAA   D  + L V GLT +G   DVSF L++GE LG++GL+GAGRTEL   
Sbjct: 242 KLEEQYPRIAAQQGD--ISLEVIGLTGSG-VHDVSFTLKKGEILGVSGLMGAGRTELMKV 298

Query: 302 LFGMHRPQSGEVLIDGKKVDFHSNRDAIRVGVAYLSEDRLSLGLNQPQSIADNLVMASLD 361
           ++G    + G + ++G+ V+  S +D +  G+AY+SEDR   GL    S+ +N+ + +LD
Sbjct: 299 IYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALD 358

Query: 362 KLLSGGLISTSKKADVVSRWISALGVKIGLPEDPIRTLSGGNQQRVAIAKWLAIGPKILI 421
           +L  G  I  + +   V  +I    +K    E  I  LSGGNQQ+VAIAK L   PK+LI
Sbjct: 359 QLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418

Query: 422 LDAPTVGVDVGARAGIFEIVRKLAAEGLSIIVISDEAPEVYFNTDRVIHMVEGRFHATY 480
           LD PT GVDVGA+  I++++ +  AEG+SII++S E PEV   +DR++ M EGR    +
Sbjct: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477



 Score = 82.8 bits (203), Expect = 3e-20
 Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 15/246 (6%)

Query: 7   LSLKNVKVTFGGVRALKGVSFEVNPGEVHCLAGENGCGKSTVIKVITGVYKPESDAELYF 66
           +SL+ + +T  GV     VSF +  GE+  ++G  G G++ ++KVI G   P     +  
Sbjct: 257 ISLEVIGLTGSGVH---DVSFTLKKGEILGVSGLMGAGRTELMKVIYGAL-PSERGVINL 312

Query: 67  DGKPIAAMTPTLAQSLGIQVIWQDL---ALFDEMTVAENIGFQYAVNGRFGLVDKRAIKN 123
           +G+ +  ++P    + GI  I +D     L   ++V EN+          G+  + A + 
Sbjct: 313 NGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEV 372

Query: 124 AAEKALARLGVSFDLDRPLKELPIAQ-----RQIVAIARALVGEARLVFMDEPTASLTQS 178
            A     RL   F++  P +E  I       +Q VAIA+ L+ + +++ +DEPT  +   
Sbjct: 373 IAVDDFIRL---FNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVG 429

Query: 179 ETDYLIDIVRNLSASGVAVVFVSHRLAEVLEISDRITVLRDGSLVGVFPVEGMTQSRVTE 238
               +  ++    A G++++ VS  + EVL +SDRI V+ +G + G F      Q ++  
Sbjct: 430 AKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMA 489

Query: 239 LMTGRN 244
              GRN
Sbjct: 490 CAVGRN 495