Pairwise Alignments

Query, 284 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 57.0 bits (136), Expect = 5e-13
 Identities = 54/248 (21%), Positives = 106/248 (42%), Gaps = 10/248 (4%)

Query: 1   MEAGIKEQSNKLGVDGFMVGPTSADPALQVRAIEDLIAQKVDFIGVVPNDAKVLEPVLKK 60
           M+ G + ++ +LG +  +V  +  DP+ ++  +EDL  + V  I + P D+  +   ++ 
Sbjct: 44  MKDGAEAKAKELGYN-LIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRI 102

Query: 61  AQAAGIKVITHESPEQLGADWDFELASAKGFGEAHGKLLGEKMGGKGSYAVFVGSLTVPL 120
           A  + I V+T +     G       +     GE  G  +  K+G         G      
Sbjct: 103 ANRSKIPVLTLDRGASRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSA 162

Query: 121 HNAWADAAIAYIKANYPDMKLVGDRYGVAEDLDKSRSTAL--DLMSANADLKGFLAFGSQ 178
                +  +  +K +   M+L+  +     D D+++   +  +L++AN D++   A   +
Sbjct: 163 ARERGEGFMNAVKGS--KMQLLASQ---PADFDRTKGLNVMENLLAANPDVQAVFAQNDE 217

Query: 179 GPIGAGRAVEERRKDGKVFVIGPFSPGQGAKLIKSGALTGGFMWNPKQAGEVFITLADRI 238
             +GA RA++   K   V ++G      G   ++ G L       P   G + I  AD++
Sbjct: 218 MALGALRAIQASGK--SVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKM 275

Query: 239 AKGETPKA 246
            KGE  +A
Sbjct: 276 LKGEKVEA 283