Pairwise Alignments

Query, 284 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 312 a.a., ABC transporter for L-fucose, substrate-binding component (from data) from Herbaspirillum seropedicae SmR1

 Score = 85.9 bits (211), Expect = 1e-21
 Identities = 76/255 (29%), Positives = 109/255 (42%), Gaps = 13/255 (5%)

Query: 1   MEAGIKEQSNKLGVDGFMVGP-TSADPALQVRAIEDLIAQKVDFIGVVPNDAKVLEPVLK 59
           ++AG  +      V     GP T A    Q+  +   +A+K   IG    D+K   P+LK
Sbjct: 44  VKAGADQAGKDYKVKVTFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLK 103

Query: 60  KAQAAGIKVITHESPEQLGADWDFELASAKGFGEAHGKLLGEKM----GGKGSYAVFVGS 115
           KAQAA I V+  +S    G D D  + +A     A   L  +KM    G +G  AV    
Sbjct: 104 KAQAAKIPVVAFDS----GVDSDIPVTTATTDNRAAAALAADKMAELVGKEGEVAVVAHD 159

Query: 116 LTVPLHNAWADAAIAYIKANYPDMKLVGDRYGVAEDLDKSRSTALDLMSANADLKGFLAF 175
            T        D  +  IK+ YP +K+V  +YG  + L KS      ++ A   +KG    
Sbjct: 160 QTSRTGVDRRDGFLERIKSAYPKIKVVSVQYGAGDQL-KSTEVTKSILQAYPKIKGIFGT 218

Query: 176 GSQGPIGAGRAVEERRKDGKVFVIGPFSPGQGAKLIKSGALTGGFMWNPKQAGEVFITLA 235
                IG    V+E ++  K+ +IG  S  Q    I+ G + G    NP   G   +  A
Sbjct: 219 NEGSAIGVVNGVKEMKR--KIIIIGYDSGKQQKDAIREGIMAGAITQNPVGIGYKTVEAA 276

Query: 236 DRIAKGE-TPKAGDT 249
            +  KGE  PK  DT
Sbjct: 277 VKAIKGEKLPKVIDT 291