Pairwise Alignments

Query, 359 a.a., LacI family transcriptional regulator from Agrobacterium fabrum C58

Subject, 339 a.a., LacI family transcription regulator (RefSeq) from Shewanella amazonensis SB2B

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 13/217 (5%)

Query: 5   SSKKATIYDLSILSGASASTVSAVLNGSWRKRRISEETADKILSLAKAQRYTTNLQARGL 64
           + K  T+ D++  +G S STVS VL GS    +++  T DK+ +      Y  N +A  L
Sbjct: 6   TKKNVTVIDVAKAAGVSKSTVSLVLQGS---DKVNPATRDKVQAAMAELGYVYNREAASL 62

Query: 65  RSSKSGLVGLLVPVYDNRFFSSMAQTFEGQARKRGLSPMVVSGRRDPEEERRTVETLIAY 124
           R  +S LV +++    N + + +A   E   R+ GL  MVV+   D + + + V++L  Y
Sbjct: 63  RGKRSNLVAIVINDLTNPYSAQLAVGLEANIRRMGLFSMVVNSGEDKDTQGQLVQSLKEY 122

Query: 125 SIDALFI--AGVTDPDGVHQVCARAALPHVNIDLPGKFASSVISNNRHGAEILTAAILAH 182
           ++ A  I  A  TD D V+Q+ A   + H+  ++ G    +V+ +N+ G    T  +L  
Sbjct: 123 NVAAFVICPAPGTDADWVNQLAATVPVIHIMREITGAKVPTVLPDNQAGTLASTRHLL-- 180

Query: 183 AAKGGSLGPDDVILFGGHDDHAS-RERIDGFHAAKAD 218
                S G   +  FGG+   +   ER+ GF AA A+
Sbjct: 181 -----SQGYTRIGFFGGNQRISDYGERLAGFKAALAE 212



 Score = 24.6 bits (52), Expect = 0.004
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 146 RAALPHVNIDLPGKFASSVISNNRHGAEILTAAILAHAAKGGSLGP-DDVILFGGHDDHA 204
           +AAL    ++  G + +++   NRHG  +  A +LA + +  +L    D++ +G  +   
Sbjct: 207 KAALAEAGLEPAGVWETAL--TNRHGGRLAMAELLASSTRPEALVCFTDIVAYGAIEQLR 264

Query: 205 SRERIDGFHAAKADYFGVEGGDDIE 229
            +  + G   A      + G DD+E
Sbjct: 265 QQGLMPGKDMA------IVGFDDLE 283