Pairwise Alignments
Query, 533 a.a., ABC transporter permease from Agrobacterium fabrum C58
Subject, 521 a.a., ABC transporter ATP-binding protein uup from Pseudomonas fluorescens FW300-N2E2
Score = 181 bits (460), Expect = 5e-50
Identities = 161/535 (30%), Positives = 251/535 (46%), Gaps = 69/535 (12%)
Query: 20 LFSDINLRFGL-ERVGLVGRNGVGKTTLLKLITGELLPSTGTVSLSG--RIGVLRQSVQV 76
LF +++++FG R GL+G NG GK+T +K++ G+L PS G V L R+G LRQ
Sbjct: 8 LFENVSVKFGAGNRYGLIGANGCGKSTFMKILGGDLEPSGGQVMLEPNVRLGKLRQDQFA 67
Query: 77 GDDETIADLFEARHALHVLSRAQA-------------GMATLE---ELGDVD-WMLEERI 119
++ T+ D H +A+ GMA E E ++D + E R
Sbjct: 68 YEEFTVIDTVIMGHEELWKVKAERDRIYSLPEMTEEDGMAVAELETEFAEMDGYTAESRA 127
Query: 120 AEALAVVGLDTSP-LTPLSALSGGQRTRAALAAQIHAVPDFLILDEPTNNLDRDSRMFLV 178
E L +G+ P+S +S G + R LA + + P+ L+LDEPTN+LD ++ +L
Sbjct: 128 GELLLGLGIGIEQHFGPMSEVSPGWKLRVLLAQALFSDPEVLLLDEPTNHLDINTIRWLE 187
Query: 179 DFLAVWRGGAIVVSHDRELLETLDAIVEMNTLGAMR-YGGKWSHYRAQKVLELAAAEQDI 237
+ L I++SHDR L ++ + G +R + G + Y + A Q
Sbjct: 188 NVLTQRSSLMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEY-------MTVATQ-- 238
Query: 238 ASAEKRLSEVRKKSQEALERKA--RRDAKGAAKAAKGDMPRIAAGGMKRRAEKTSGDNAN 295
S E+ LS+ KK + E ++ R + A+KA + A ++ +K
Sbjct: 239 -SREQLLSDNAKKKAQISELQSFVSRFSANASKAKQ-------ATSRAKQIDKIQLAEVK 290
Query: 296 LASRLKTEAADDLRTARERIEILQDVTVTLPPSGLHATKTVLSLQGLTAGYFPENPVLKD 355
+SR+ + +R + + Q V V G F P+ KD
Sbjct: 291 PSSRV----SPFIRFEQTKKLHRQAVIVERMAKG-----------------FDGKPLFKD 329
Query: 356 LSFEITGPQRVAVTGPNGSGKTTLLSVITGDLEPFAGSVY---LGVSGAFLDQQVSLLDA 412
SF + +RVA+ GPNG GKTTLL + +LEP AG+V G + +
Sbjct: 330 FSFTVEAGERVAIIGPNGIGKTTLLRTLVNELEPDAGTVKWTDAAELGYYAQDHAHDFED 389
Query: 413 TLSIRDNFLRLNPQSGENACRAALARFMFRADAALRIVGTLSGGQMLRAGLACVLGGPQP 472
+++ D ++ Q GE R L R +F D L+ V +SGG+ R ++ Q
Sbjct: 390 DVNLFD-WMGQWTQGGEQLVRGTLGRMLFSNDEILKSVKVISGGEQGRMLFGKLI--LQK 446
Query: 473 PQLLILDEPTNHLDIDSITAVEAGLRAYDGALLVVSHDEAFLSGIGIDRRLELGA 527
P +L++DEPTNHLD++SI A+ L Y G L+ VSHD F+S + R +EL A
Sbjct: 447 PNVLVMDEPTNHLDMESIEALNLALENYPGTLIFVSHDREFVSSLA-TRIIELSA 500
Score = 78.6 bits (192), Expect = 5e-19
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 16 DGHLLFSDINLRFGL-ERVGLVGRNGVGKTTLLKLITGELLPSTGTVSLS--GRIGVLRQ 72
DG LF D + ERV ++G NG+GKTTLL+ + EL P GTV + +G Q
Sbjct: 322 DGKPLFKDFSFTVEAGERVAIIGPNGIGKTTLLRTLVNELEPDAGTVKWTDAAELGYYAQ 381
Query: 73 SVQVGDDETIADLFEARHALHVLSRAQAGMATLEELGDVDWMLEERIAEALAVVGLDTSP 132
D E +LF+ + Q G + G + ML +
Sbjct: 382 D-HAHDFEDDVNLFD-----WMGQWTQGGEQLVR--GTLGRMLFS-----------NDEI 422
Query: 133 LTPLSALSGGQRTRAALAAQIHAVPDFLILDEPTNNLDRDSRMFLVDFLAVWRGGAIVVS 192
L + +SGG++ R I P+ L++DEPTN+LD +S L L + G I VS
Sbjct: 423 LKSVKVISGGEQGRMLFGKLILQKPNVLVMDEPTNHLDMESIEALNLALENYPGTLIFVS 482
Query: 193 HDRELLETL-DAIVEMNTLGAMRYGGKWSHY-RAQKVL 228
HDRE + +L I+E++ G + + G + Y R+Q V+
Sbjct: 483 HDREFVSSLATRIIELSADGVVDFSGTYDDYLRSQGVV 520
Score = 67.4 bits (163), Expect = 1e-15
Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 41/210 (19%)
Query: 347 FPENPVLKDLSFEITGPQRVAVTGPNGSGKTTLLSVITGDLEPFAGSVYLGVS------- 399
F P+ +++S + R + G NG GK+T + ++ GDLEP G V L +
Sbjct: 3 FGAKPLFENVSVKFGAGNRYGLIGANGCGKSTFMKILGGDLEPSGGQVMLEPNVRLGKLR 62
Query: 400 -GAFLDQQVSLLDATL----------SIRDNFLRLNPQSGENACRAALARFMF------- 441
F ++ +++D + + RD L + E+ A F
Sbjct: 63 QDQFAYEEFTVIDTVIMGHEELWKVKAERDRIYSLPEMTEEDGMAVAELETEFAEMDGYT 122
Query: 442 ---RADAALRIVG-----------TLSGGQMLRAGLACVLGGPQPPQLLILDEPTNHLDI 487
RA L +G +S G LR LA L P++L+LDEPTNHLDI
Sbjct: 123 AESRAGELLLGLGIGIEQHFGPMSEVSPGWKLRVLLAQALF--SDPEVLLLDEPTNHLDI 180
Query: 488 DSITAVEAGLRAYDGALLVVSHDEAFLSGI 517
++I +E L ++++SHD FL+ +
Sbjct: 181 NTIRWLENVLTQRSSLMIIISHDRHFLNSV 210