Pairwise Alignments

Query, 533 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 555 a.a., energy-dependent translational throttle protein EttA from Vibrio cholerae E7946 ATCC 55056

 Score =  168 bits (426), Expect = 4e-46
 Identities = 158/558 (28%), Positives = 260/558 (46%), Gaps = 97/558 (17%)

Query: 3   HAITLSDLSWATPDGHLLFSDINLRFGL-ERVGLVGRNGVGKTTLLKL-------ITGEL 54
           +  T+S +S   P    +  DI+L F    ++G++G NG GK+TLL++       I GE 
Sbjct: 4   YVYTMSRVSKIVPPKRQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIDGEA 63

Query: 55  LPSTGTVSLSGRIGVLRQSVQVGDDETIADLFE-----ARHALHVLSRAQAGMAT----- 104
            P  G      ++G L Q  ++ + +T+ ++ E       +AL  L    A  A      
Sbjct: 64  RPQPGL-----KVGYLPQEPKLDESKTVREVVEEAVADVAYALKRLDEVYAAYAEPDADF 118

Query: 105 ---LEELGDVDWMLE-----------ERIAEALAVVGLDTSPLTPLSALSGGQRTRAALA 150
               +E G+++ +++           ER A+AL +   D      +  LSGG+R R A+ 
Sbjct: 119 DALAKEQGELEALIQAKNGHNLDNALERAADALRLPEWDAQ----VKYLSGGERRRVAIC 174

Query: 151 AQIHAVPDFLILDEPTNNLDRDSRMFLVDFLAVWRGGAIVVSHDRELLETLDA-IVEMNT 209
             +   PD L+LDEPTN+LD +S  +L  FL  + G  + ++HDR  L+     I+E++ 
Sbjct: 175 RLLLENPDMLLLDEPTNHLDAESVAWLERFLVDYAGTVVAITHDRYFLDNAAGWILELDR 234

Query: 210 LGAMRYGGKWSHYRAQKVLELAAAEQDIASAEKRLSEVRKKSQEALERKARRDAKGAAKA 269
              + + G ++ +  QK   L    +  AS EK     R+K+ E      R++ KG    
Sbjct: 235 GEGIPWQGNYTSWLEQKDARL----KQEASQEK----ARQKTIEKELEWVRQNPKGRQAK 286

Query: 270 AKGDMPRIAAGGMKRRAEKTSGDNANLASRLKTEAADDLRTARERIEILQDVTVTLPPSG 329
           +K  M R          + T     N  + L                          P G
Sbjct: 287 SKARMARF------EELQNTEHQKRNETNEL------------------------FIPPG 316

Query: 330 LHATKTVLSLQGLTAGYFPENPVLKDLSFEITGPQRVAVTGPNGSGKTTLLSVITGDLEP 389
                 V+ ++ LT   F    ++ DLSF +     V + GPNG+GK+TL  +++G  +P
Sbjct: 317 ERLGDKVIEVKNLTKS-FDGRVLIDDLSFSMPKGAIVGIIGPNGAGKSTLFKMLSGVEKP 375

Query: 390 FAGSVYLG--VSGAFLDQ-QVSLLDATLSIRD-----NFLRLNPQSGENACRAALARFMF 441
            +G++ LG  V  A +DQ + S+ D     ++     + +R+N  + E   RA  +RF F
Sbjct: 376 DSGTIELGDTVKLASVDQFRDSMNDKHTVFQEISEGADIIRIN--NFEIPARAYCSRFNF 433

Query: 442 RADAALRIVGTLSGGQMLRAGLACVL--GGPQPPQLLILDEPTNHLDIDSITAVEAGLRA 499
           +     +++G LSGG+  R  LA +L  GG     +L+LDEPTN LD++++ A+E  L  
Sbjct: 434 KGVDQQKVIGELSGGERNRVHLAKLLKAGG----NVLLLDEPTNDLDVETLRALEEALLE 489

Query: 500 YDGALLVVSHDEAFLSGI 517
           + G  +V+SHD  FL  I
Sbjct: 490 FPGCAMVISHDRWFLDRI 507



 Score = 76.3 bits (186), Expect = 3e-18
 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 20/212 (9%)

Query: 16  DGHLLFSDINLRFGLER---VGLVGRNGVGKTTLLKLITGELLPSTGTVSLSGRIGVLRQ 72
           DG +L  D++  F + +   VG++G NG GK+TL K+++G   P +GT+ L         
Sbjct: 334 DGRVLIDDLS--FSMPKGAIVGIIGPNGAGKSTLFKMLSGVEKPDSGTIELG-------D 384

Query: 73  SVQVGDDETIADLFEARHALHVLSRAQAGMATLEELGDVDWMLEERIAEALAVVGLDTSP 132
           +V++   +   D    +H   V      G A +  + + + +            G+D   
Sbjct: 385 TVKLASVDQFRDSMNDKHT--VFQEISEG-ADIIRINNFE-IPARAYCSRFNFKGVDQQK 440

Query: 133 LTPLSALSGGQRTRAALAAQIHAVPDFLILDEPTNNLDRDSRMFLVDFLAVWRGGAIVVS 192
           +  +  LSGG+R R  LA  + A  + L+LDEPTN+LD ++   L + L  + G A+V+S
Sbjct: 441 V--IGELSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAMVIS 498

Query: 193 HDRELLETLDA-IVEMNTLGAMR-YGGKWSHY 222
           HDR  L+ +   I++    G +  Y G ++ Y
Sbjct: 499 HDRWFLDRIATHILDYRDEGKVNFYEGNYTEY 530