Pairwise Alignments

Query, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  451 bits (1161), Expect = e-131
 Identities = 248/549 (45%), Positives = 340/549 (61%), Gaps = 29/549 (5%)

Query: 6   VLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAPASS 65
           VL + NL+  F + G+ + V   VS  +  GET+A+VGESGSGKSVT+ +++RLL   S+
Sbjct: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64

Query: 66  H-IEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKG 124
           H + G +     + L  SER +RG+RG  I MIFQEPM SLNP+  IG+Q+ E L  H+G
Sbjct: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124

Query: 125 LSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 184
           L    A  + +  L KV I +   + + YPH+ SGG RQRVMIAMAL + P+LLIADEPT
Sbjct: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184

Query: 185 TALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATEDI 244
           TALDV++Q QILDL+K LQ+E GM++LFITHD+ +V  IADR  VM  G  VET A   +
Sbjct: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244

Query: 245 FRRGQHPYTRALLSAVPKLGSMHDRQWPTRFPVLDLKTGLSTEPQEVAETVACGQTPVLS 304
           F    HPYT+ L++A                           +P+ V    A     +L 
Sbjct: 245 FAAPAHPYTQQLINA---------------------------DPRGVPVPTAMDAPTLLQ 277

Query: 305 VKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLVE 364
            + L   FPI+ G + R    + AV ++SF L +G++L LVGESG GKSTTG +I++L+ 
Sbjct: 278 AEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLA 337

Query: 365 PSSGDVSLDGYDVMRLDTVGLRNMRKSVQMIFQDPFSSLNPRMTVGTAISEPFIKHRLGS 424
            S G +   G D+  L    +   R  +Q++FQDP+S+LNPRM+V   I E    H   +
Sbjct: 338 -SQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLN 396

Query: 425 TKQAKEKTADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSALD 484
             +       ++++VGL  D  +RYP+EFSGGQRQRIAIARAL L P+ I+ DE  S+LD
Sbjct: 397 DDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLD 456

Query: 485 VSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNP 544
            +++AQV +LL DLQQ   L +LFISHD+AV+  + H   VM  GEIVE G   ++F+NP
Sbjct: 457 RTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENP 516

Query: 545 QHPYTKKLM 553
            HPYT++L+
Sbjct: 517 SHPYTQQLV 525



 Score =  186 bits (473), Expect = 2e-51
 Identities = 115/270 (42%), Positives = 158/270 (58%), Gaps = 19/270 (7%)

Query: 302 VLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMR 361
           VL + NL   F I     A Q   V   E VS  + +GETL+LVGESG GKS T  +I+R
Sbjct: 5   VLKIDNLSVGFGI-----AGQARPV--TEGVSLTIARGETLALVGESGSGKSVTANAILR 57

Query: 362 LVEPSS-----GDVSLDGYDVMRLDTVGLRNMRKS-VQMIFQDPFSSLNPRMTVGTAISE 415
           L+   S     G +     D +R     LR +R   + MIFQ+P  SLNP   +G  + E
Sbjct: 58  LLPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVE 117

Query: 416 PFIKHRLGSTKQAKEKTADLLEKVGLSAD--MANRYPHEFSGGQRQRIAIARALALDPKV 473
               HR      A++K  + L KVG+       N YPHE SGG+RQR+ IA AL  +P++
Sbjct: 118 TLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPEL 177

Query: 474 IVADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVE 533
           ++ADE  +ALDVS++AQ+ +LL  LQQ L +A LFI+HD+++V R++ RVAVM  G++VE
Sbjct: 178 LIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVE 237

Query: 534 IGPRAAVFDNPQHPYTKKLMAA----VPVP 559
                 +F  P HPYT++L+ A    VPVP
Sbjct: 238 TNACHTLFAAPAHPYTQQLINADPRGVPVP 267