Pairwise Alignments

Query, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  468 bits (1203), Expect = e-136
 Identities = 254/563 (45%), Positives = 367/563 (65%), Gaps = 17/563 (3%)

Query: 6   VLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAPASS 65
           +L V+NL   +       + V+ ++ D++ GE V +VGESG+GKS    +++ LL+P  +
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62

Query: 66  HIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKGL 125
              GEV LNG  +  LS + MR VRG+ I  IFQ+PMTSLNP+FT+  Q++E +  +  +
Sbjct: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122

Query: 126 SKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTT 185
           S +EA    + L+++V IP   +R  +YPHQFSGGMRQRV+IA+ALA  P L+IADEPTT
Sbjct: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182

Query: 186 ALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATEDIF 245
           ALDV+IQ QIL+LI+ L ++  +  + +THDMGVV+ + DR  VMYRGD VE G T  + 
Sbjct: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242

Query: 246 RRGQHPYTRALLSAVPKLGSMHDRQWPTRFPVLD-LKTGLSTEPQEVAETVACGQT---- 300
              +HPYTR+L+SAVP+     D     RFP++  ++     +P +V ++   GQ+    
Sbjct: 243 GTPEHPYTRSLISAVPRSDRKLD-----RFPLVSYIEEAKELKPLDV-KSHWLGQSQDHR 296

Query: 301 ----PVLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTG 356
               P+L V+N+  RF  +  L+  +   V A  NVSF + +GET  LVGESG GKST  
Sbjct: 297 KYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIA 356

Query: 357 RSIMRLVEPSSGDVSLDGYDVMRLDTVGLRN-MRKSVQMIFQDPFSSLNPRMTVGTAISE 415
           R I  L +P++G V+ +G D+  L +   R  +R+ +QM+FQ+P++S+NPRM +   I+E
Sbjct: 357 RVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAE 416

Query: 416 PFIKHRL-GSTKQAKEKTADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVI 474
           P   H+L  S  + ++   DLLE VGL      +YPHEFSGGQRQRI+IARALA  P+++
Sbjct: 417 PIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLL 476

Query: 475 VADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 534
           + DE  SALDVS++AQ+ NLL DLQ  LNL  LFISHD+ V+ ++  RV VM +G ++E+
Sbjct: 477 ICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEV 536

Query: 535 GPRAAVFDNPQHPYTKKLMAAVP 557
            P   +F +PQH Y+KKL++ +P
Sbjct: 537 APTEQLFTDPQHEYSKKLISLMP 559



 Score =  202 bits (513), Expect = 4e-56
 Identities = 111/266 (41%), Positives = 169/266 (63%), Gaps = 14/266 (5%)

Query: 302 VLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMR 361
           +L VKNL   +P R G+ A       AV++++ D+ +GE + +VGESG GKST G +++ 
Sbjct: 3   LLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55

Query: 362 LVEP----SSGDVSLDGYDVMRLDTVGLRNMRKS-VQMIFQDPFSSLNPRMTVGTAISEP 416
           L+ P    + G+V L+G  +  L    +R +R S +  IFQDP +SLNP  TV   ++E 
Sbjct: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115

Query: 417 FIKHRLGSTKQAKEKTADLLEKVGLSA--DMANRYPHEFSGGQRQRIAIARALALDPKVI 474
              +   S ++A ++   L+++VG+    +   +YPH+FSGG RQR+ IA ALA +P +I
Sbjct: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175

Query: 475 VADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 534
           +ADE  +ALDVSI+ Q+ NL+ +L +  N+  + ++HDM VV  V+ RVAVMY G++VE 
Sbjct: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235

Query: 535 GPRAAVFDNPQHPYTKKLMAAVPVPD 560
           GP A V   P+HPYT+ L++AVP  D
Sbjct: 236 GPTAKVLGTPEHPYTRSLISAVPRSD 261



 Score =  182 bits (462), Expect = 3e-50
 Identities = 114/275 (41%), Positives = 160/275 (58%), Gaps = 16/275 (5%)

Query: 3   TKPVLSVRNLTTSFLVDG-------EWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLS 55
           T P+L V N+   F+          E+     +VSF V  GET  +VGESGSGKS  +  
Sbjct: 299 TGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARV 358

Query: 56  LMRLLAPASSHIEGEVLLNGRNLLTL-SEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQ 114
           +  L  P +    G V   G +L  L SE E R +R   + M+FQ P TS+NP   I   
Sbjct: 359 IAGLYQPNA----GRVTFEGIDLTALKSEHERRPLR-RQMQMVFQNPYTSMNPRMKIFDI 413

Query: 115 ISEVLIRHK-GLSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALAS 173
           I+E +  HK   S+ E R     LLE V +   A    +YPH+FSGG RQR+ IA ALA+
Sbjct: 414 IAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALAT 471

Query: 174 RPKLLIADEPTTALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRG 233
           RP+LLI DEPT+ALDV++Q QIL+L+K LQ+E  +++LFI+HD+ V+ ++ DR  VM  G
Sbjct: 472 RPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMG 531

Query: 234 DAVETGATEDIFRRGQHPYTRALLSAVPKLGSMHD 268
             +E   TE +F   QH Y++ L+S +P+   + +
Sbjct: 532 TLLEVAPTEQLFTDPQHEYSKKLISLMPEFTGLRE 566