Pairwise Alignments

Query, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 548 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  489 bits (1260), Expect = e-143
 Identities = 270/558 (48%), Positives = 369/558 (66%), Gaps = 40/558 (7%)

Query: 6   VLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLL-APAS 64
           +L VRNL+  F         V+ +S+ +  GET+AI+GESGSGKSV+S ++M L+  P  
Sbjct: 5   LLEVRNLSVEFHTAAGVVHAVKSISYHLDKGETLAILGESGSGKSVSSSAIMNLIDMPPG 64

Query: 65  SHIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKG 124
               GE+LL+GR+LLT+   E R V G  ++MIFQ+P++ LNP++++G QISE +  H G
Sbjct: 65  RISSGEILLDGRDLLTMPAEERREVNGRRVAMIFQDPLSHLNPVYSVGWQISEAMTTH-G 123

Query: 125 LSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 184
           L+  +AR E +RLL +V IP       +YPH+FSGG RQRVMIAMALA RP LLIADEPT
Sbjct: 124 LAGSKAREEALRLLRRVGIPEPERAMRKYPHEFSGGQRQRVMIAMALALRPDLLIADEPT 183

Query: 185 TALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATEDI 244
           TALDVT+Q ++L L+K LQ E GM+VL ITHD+GVV+EIADR +VM +G  VE G   +I
Sbjct: 184 TALDVTVQAEVLKLLKELQRETGMAVLIITHDLGVVSEIADRVVVMEKGAIVEAGTVREI 243

Query: 245 FRRGQHPYTRALLSAVPKLGSMHDRQWPTRFPVLDLKTGLSTEPQEVAETVACGQTPVLS 304
           ++  QHPYT+ L++A P  G+MH                   EP   AE       P+LS
Sbjct: 244 YKNPQHPYTQKLIAAAPGKGAMH-------------------EPGARAE-------PLLS 277

Query: 305 VKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLVE 364
           V+++            +  G+  A++ +SFDL  GET+++VGESG GKST  R+++RL E
Sbjct: 278 VRDV-----------RKTYGSFEALKGISFDLMPGETMAVVGESGSGKSTLARALLRLDE 326

Query: 365 PSSGDVSLDGYDVMRLDTVGLRNMRKSVQMIFQDPFSSLNPRMTVGTAISEPFIKH-RLG 423
           P SG     G D+  L    L  +R+ +QM+FQDP  SLNPRMTV   ISE ++ H  + 
Sbjct: 327 PDSGTALWKGRDLFALSPAELYKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPDIL 386

Query: 424 STKQAKEKTADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSAL 483
              + +E+ A+LL +VGLSA+  +RYPH+FSGGQRQRIAIARALAL+P++I+ DE+VSAL
Sbjct: 387 PKAKWRERVAELLVQVGLSAEHMSRYPHQFSGGQRQRIAIARALALEPQLIICDEAVSAL 446

Query: 484 DVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDN 543
           DVS++AQV  LL  L++ + +AF+FI+HD+ VV   +  V VM  GE+VE+G    VFD 
Sbjct: 447 DVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVREVFDT 506

Query: 544 PQHPYTKKLMAAVPVPDP 561
           P+  YT+ L+AA   PDP
Sbjct: 507 PRQAYTRALLAASLSPDP 524