Pairwise Alignments

Query, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  474 bits (1221), Expect = e-138
 Identities = 260/556 (46%), Positives = 359/556 (64%), Gaps = 26/556 (4%)

Query: 6   VLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLL-APAS 64
           +L V++LT  FL  G        VSF V +GET+ I+GESGSGKSV++ ++M L+  P  
Sbjct: 6   LLEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTPPG 65

Query: 65  SHIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKG 124
               G V   GR+L +LSE E R + G  I+MIFQ+P++ LNP++TIG Q+ EV   H  
Sbjct: 66  DICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVFTVHGV 125

Query: 125 LSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 184
            S  EAR   + +L +V IP    R D+YPHQFSGG RQR+MI MA+A RP++LIADEPT
Sbjct: 126 ASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILIADEPT 185

Query: 185 TALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATEDI 244
           TALDV++Q QIL+L+K LQ E+G++++ ITHD+ V A +ADR IVM  G  VE G    +
Sbjct: 186 TALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEGEARAV 245

Query: 245 FRRGQHPYTRALLSAVPKLGSMHDRQWPTRFPVLDLKTGLSTEPQEVAETVACGQTPVLS 304
           F    H YTR L++A+P      D + P R             P   A        P+L 
Sbjct: 246 FENPAHSYTRTLINALPHA----DDRAPPR-------------PARPA------GKPILE 282

Query: 305 VKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLVE 364
           VKN+   + + SG +A+    +HAV+N+SFD+  GET+ +VGESG GKST  R ++ L E
Sbjct: 283 VKNIDKFYTLSSGFFAK-PARLHAVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGLNE 341

Query: 365 PSSGDVSLDGYDVMRLDTVGLRNMRKSVQMIFQDPFSSLNPRMTVGTAISEPFIKHR-LG 423
            S G+    G DV+++D   L   R+ VQM+FQDP+SS+NPRMTV   +SEP+  H+ + 
Sbjct: 342 ASGGEALFHGRDVLKMDRKQLLAFRRKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDIL 401

Query: 424 STKQAKEKTADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSAL 483
              + +++  +LL  VGL+ + A RYPH+FSGGQRQRIAIARALA DP+++V DE+VSAL
Sbjct: 402 EKTRWRDRVTELLGLVGLNPEHAKRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSAL 461

Query: 484 DVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDN 543
           DVS++ QV +LL +L+  L LA++FI+HD+ +V   + R+ VM  GEIVE      +F N
Sbjct: 462 DVSVQVQVIDLLAELRDRLGLAYIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRN 521

Query: 544 PQHPYTKKLMAAVPVP 559
           PQH YT++L+ A P P
Sbjct: 522 PQHAYTRQLINATPKP 537



 Score =  194 bits (494), Expect = 6e-54
 Identities = 114/267 (42%), Positives = 163/267 (61%), Gaps = 16/267 (5%)

Query: 4   KPVLSVRN------LTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLM 57
           KP+L V+N      L++ F         V+++SFDV +GET+ IVGESGSGKS    ++ 
Sbjct: 278 KPILEVKNIDKFYTLSSGFFAKPARLHAVKNLSFDVAAGETIGIVGESGSGKS----TVA 333

Query: 58  RLLAPASSHIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISE 117
           R+L   +    GE L +GR++L +  +++   R   + M+FQ+P +S+NP  T+   +SE
Sbjct: 334 RVLLGLNEASGGEALFHGRDVLKMDRKQLLAFR-RKVQMVFQDPYSSMNPRMTVFDIVSE 392

Query: 118 VLIRHKG-LSKQEARAETVRLLEKVRI-PNAASRFDEYPHQFSGGMRQRVMIAMALASRP 175
               HK  L K   R     LL  V + P  A R   YPHQFSGG RQR+ IA ALA  P
Sbjct: 393 PWRIHKDILEKTRWRDRVTELLGLVGLNPEHAKR---YPHQFSGGQRQRIAIARALACDP 449

Query: 176 KLLIADEPTTALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDA 235
           +L++ DE  +ALDV++Q Q++DL+  L++  G++ +FITHD+ +V   ADR IVM  G+ 
Sbjct: 450 ELVVCDEAVSALDVSVQVQVIDLLAELRDRLGLAYIFITHDLPIVRHFADRIIVMKSGEI 509

Query: 236 VETGATEDIFRRGQHPYTRALLSAVPK 262
           VE   TE+IFR  QH YTR L++A PK
Sbjct: 510 VEHATTEEIFRNPQHAYTRQLINATPK 536



 Score =  188 bits (478), Expect = 4e-52
 Identities = 105/245 (42%), Positives = 150/245 (61%), Gaps = 8/245 (3%)

Query: 324 GAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLVEPSSGD-----VSLDGYDVM 378
           GA  A   VSF +  GETL ++GESG GKS +  +IM L++   GD     V+  G D+ 
Sbjct: 21  GAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTPPGDICAGSVAYRGRDLS 80

Query: 379 RLDTVGLRNMR-KSVQMIFQDPFSSLNPRMTVGTAISEPFIKHRLGSTKQAKEKTADLLE 437
            L     R++  + + MIFQDP S LNP  T+G  + E F  H + S  +A+++  ++L 
Sbjct: 81  SLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVFTVHGVASGAEARQRAIEILG 140

Query: 438 KVGLSAD--MANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSALDVSIKAQVCNLL 495
           +VG+       ++YPH+FSGGQRQRI I  A+AL P++++ADE  +ALDVS++AQ+  LL
Sbjct: 141 RVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILIADEPTTALDVSVQAQILELL 200

Query: 496 LDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNPQHPYTKKLMAA 555
             LQ    LA + I+HD+ V   ++ RV VM  G IVE G   AVF+NP H YT+ L+ A
Sbjct: 201 KKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEGEARAVFENPAHSYTRTLINA 260

Query: 556 VPVPD 560
           +P  D
Sbjct: 261 LPHAD 265