Pairwise Alignments

Query, 268 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  216 bits (551), Expect = 3e-61
 Identities = 104/265 (39%), Positives = 159/265 (60%)

Query: 3   RNKSALAGLIIVLFFAVLAIAAPILPIADPVATSWSAIRKAPSAAHWLGTDDLGRDILSR 62
           RNK+A+  L +++   +  +  P+        T W A+   PSA HW GTD LGRD+  R
Sbjct: 35  RNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVR 94

Query: 63  MIYGARASLMAGVVSVMIAVVIGVPFGLIAGYFGGWVDMVISRITEALLAMPFLIMAIAL 122
            + G R SLM G++  ++AV+IG  +G  +G+ GG  D V+ RI E L A+PF+ + I L
Sbjct: 95  TLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVL 154

Query: 123 AAFLGPSLTNAMIAIGLSAMPIFVRLTRGQVLAVKMEDYVEGARSIGLNHIDIMTRYILP 182
             F G ++    +AIG  A     R+ RGQ L+++ ++++E A   G++  +I+TR+I+P
Sbjct: 155 VTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVP 214

Query: 183 NVFAPIIVQATLTVATAIIAEASLSFLGLGQQAPAPSWGSMLNTAKNFLSQAPWMTLWPG 242
           NV   + V +TL + + I+ E+ LSFLGLG Q P  SWG++L    N +  A W  L+P 
Sbjct: 215 NVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPA 274

Query: 243 IAIFLVVIGFNLLGDGLRDALDPRE 267
             + L +  FN +GDGLRDALDP++
Sbjct: 275 AFMVLTLFCFNYVGDGLRDALDPKD 299