Pairwise Alignments

Query, 372 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 373 a.a., ABC transporter, permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (256), Expect = 1e-26
 Identities = 103/388 (26%), Positives = 172/388 (44%), Gaps = 47/388 (12%)

Query: 8   IFQLGIKELRGLARDGMLLLLIVYAFTLQIYTGSSALPETLNNAAIAIVDEDQSPLSGRI 67
           I+ + +KELR L+RD M   +IV    +Q+     A+     +    +V+   S  S  +
Sbjct: 5   IWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSSYSRAL 64

Query: 68  STAFYPPYFAPPKQI--SIAEMDKRMDAGLDTFALNIPPDFQRRLMAGQQPAIQLNIDAT 125
             A         K+   S A+ +  +  G     L +  D   RL+  + PA        
Sbjct: 65  VKAVEATQVVDFKRSYSSAAQAEAAITRGEVKAVLYLGADLDERLV--RHPAFA------ 116

Query: 126 RMSQAFSGGGYVQNIVTSEVQEYVNRYRGATTVPVD----LTLRSR---------FNPEL 172
              QA+      Q +V        +  R    +P+D     TL+S          FNPE 
Sbjct: 117 --GQAYFAEPVGQWLVDGSDTVVASTIRSLRQMPLDEITGRTLKSNPPSFEVVQYFNPE- 173

Query: 173 DKSWFGSINNIITAI-TMLSIVLTGAALIREREHGTVEHLLVMPVTPLEIMLSKVWSMGL 231
            +S    +  ++  I TM  ++ T AA++RERE G +E L+  PV PLE+ML K+    L
Sbjct: 174 QRSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVL 233

Query: 232 V-----VLVASAFSLFVVVKGLLAIPIEGSLSLFLLGTALQLFAMTSMGIFLATVAGSMP 286
           V      ++ SA  L      L  +PI G +        L + A  ++G+ ++T+A +  
Sbjct: 234 VGFVQVTIILSAGHL------LFDVPIRGGIDSIAFAAMLFICASLTLGLVISTIAKTQL 287

Query: 287 QFGMLLILFLLPLQVLSGAMTPRESMPDIIQYIMLLAPNTHFVILAQSVLFRGGGL---- 342
           Q   + +  LLP  +LSG M P E+MP   Q+I    P THF+ ++++++ R   +    
Sbjct: 288 QSMQMTVFILLPSILLSGFMFPYEAMPVAAQWIAEALPATHFMRMSRAIVLRDAEVSDLQ 347

Query: 343 -DVVWPQLLALLAIGSALFIFALRRFRR 369
            D +W  ++    +G  L + +LR  +R
Sbjct: 348 FDALW--MIGFTCLG--LLVASLRFSKR 371