Pairwise Alignments

Query, 925 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 907 a.a., ABC-type multidrug transport system, permease component from Pseudomonas fluorescens FW300-N2E2

 Score =  917 bits (2371), Expect = 0.0
 Identities = 479/886 (54%), Positives = 616/886 (69%), Gaps = 9/886 (1%)

Query: 13  PGAPVARLTDVRLAFGSTVALADISVEIPAGRMIGLIGPDGVGKSSLLSLISGARAIQKG 72
           P     R + +   +G  VAL+DI+  +PAG   GLIGPDG GKSSLL LI+G + +Q G
Sbjct: 4   PAGEALRASGLEHRYGQQVALSDIAFSLPAGTRCGLIGPDGAGKSSLLGLIAGVKKLQHG 63

Query: 73  NVEVLAGDMSDPRHREDTCPRIAYMPQGLGKNLYPTLSVFENIDFFGRLFGQDGRERKAR 132
            ++VL   + D RHR     RIA+MPQGLG NLYP LS+ ENI FFG LFG    + + R
Sbjct: 64  QLDVLGASIDDRRHRNTLYRRIAFMPQGLGGNLYPDLSIRENIRFFGTLFGLSRADCEQR 123

Query: 133 IAELLKSTGLERFADRPAMKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFW 192
           +  LL +T L+RFADRPA KLSGGMKQKLGLCCALIH+PDLLILDEPTTGVDPLSRR+FW
Sbjct: 124 MGTLLLATDLQRFADRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSRRRFW 183

Query: 193 ELIDSIRAGRPGMSVIVATAYMEEAAGFDWLVAMDGGKILATGSPGELLERTSTANLDAA 252
           ELI+ +R  RP ++++VATAYMEEA  F+  + +D G+++A G   EL   T    LD+A
Sbjct: 184 ELIEDVRRQRPQLTLLVATAYMEEAEQFEHCLMLDNGRLIAKGLSAELATVTPDGKLDSA 243

Query: 253 FIALLPEEKRKDYHEVHIAPRRVTHDGDYAIEASHLSMRFGDFTAVDNVSFKIPRGEIFG 312
           F     +  R    E  + P R  +  D AIEA  L++RFGDFTAVD VSF I RGEIFG
Sbjct: 244 FTHFQGDSGRDV--EPLVIPPRSANTADIAIEAHDLTLRFGDFTAVDKVSFAIGRGEIFG 301

Query: 313 FLGSNGCGKSTTMKMLTGLLAASEGEAKLFGHKVDASDMAIRHRVGYMSQAFSLYSELTV 372
           FLGSNGCGK+TTMK+LTGL+ ASEG A+L G+ V+A D+A R RVG+MSQ+FSLY EL+ 
Sbjct: 302 FLGSNGCGKTTTMKVLTGLIPASEGSARLLGNPVNAKDLATRKRVGFMSQSFSLYGELSA 361

Query: 373 RQNLDLHARLFKLPEATIQPRIAEMAERFDLGTVMDTLPDDLPLGIRQRLSLAVAMIHSP 432
           RQNL+LHA+LF LP    + RI E+ +RF+L  + D     LPLG+RQRLSLAVA++H P
Sbjct: 362 RQNLELHAKLFDLPTTDSRQRIDELIQRFNLQALADQPSGALPLGLRQRLSLAVAVLHRP 421

Query: 433 DILILDEPTSGVDPVARDGFWQILADLSRNDNVTIFISTHFMNEAERCDRISLMHAGKVL 492
           ++LILDEPTSGVDP ARD FW++L +LSR   VTIF+STHFMNEA+RCDRISLMHAGKVL
Sbjct: 422 EVLILDEPTSGVDPAARDDFWRLLIELSREQGVTIFLSTHFMNEAQRCDRISLMHAGKVL 481

Query: 493 ISDTPDAITKSRNAETLEEAFVAYLEDASGVKKAEPAIAPAPATEVVPTQHATPARKRFF 552
             DTP A+    N +TLE AFV  LE+A G  + + A  P  + +        P  +R  
Sbjct: 482 ACDTPAALQAQFNGQTLEAAFVTCLENAQGETQQDAAPVPLDSADA-------PRDRRGL 534

Query: 553 DVRRMFSYTRREALELQRDPIRGTLAVLGSVILMFVIGYGINLDVEDLSFAVLDRDDSTI 612
            + R+++   RE  EL RD +R   A+LG++ +M V G+GI+LDVE L+FA  D+D S  
Sbjct: 535 SLGRLWAVASREGKELLRDKVRMAFALLGALFMMVVFGFGISLDVEKLAFAAYDQDQSPQ 594

Query: 613 SRDYVLDIAGSRYFIEKEPIRDYADMDRRMRDGELSLAIEIPPGFGRDVLRGKTVEVGAW 672
           SR Y+     SRYF E+  I D  ++ RR++  E+ LA+EIPPGFGRD+  G+   VGAW
Sbjct: 595 SRAYLEAFRSSRYFEEQPIISDAKELHRRLQRSEIKLALEIPPGFGRDLYAGRQPTVGAW 654

Query: 673 IDGAMPQRAETVRGYVQGMHQTWLARKASEIYGNAATQSSFSIETRYRYNPDVKSLVAMV 732
           +DG +P RAET R YVQ +HQ  L + A         Q   ++ETR+RYN DV S+ A+ 
Sbjct: 655 LDGGIPFRAETSRNYVQAVHQANLEQLAELSSRAPNRQPGATLETRFRYNQDVVSVNAIG 714

Query: 733 PAVIPLLLMLIPAMLAALSVVREKELGSIVNLYVTPTTRLEFLIGKQLPYVALGMLNFLL 792
           P V+ L+L  IPAML AL +VREKELGSI N Y TP TRLEFL+GKQ+PY+A+ ++N  L
Sbjct: 715 PGVMALILAFIPAMLTALGIVREKELGSITNFYATPLTRLEFLLGKQVPYLAVSLINLAL 774

Query: 793 LTAFAIFIFQVPFTGSYLAYATGALLFVIIATSIGLVMSSFMKSQIAAIFGTALLTLIPA 852
           LTA   ++F VPF GS L  A G LL+V+  TS+GL++S+F ++QIAAI GT ++T +P 
Sbjct: 775 LTAMNRWLFGVPFKGSGLTLAIGGLLYVLATTSMGLLISAFTRTQIAAILGTMIITSLPT 834

Query: 853 TQYSGMIDPVSSLQGAGAFIGNIYPATYFMTISRGTFSKGLDFAGL 898
            Q+SG+I P SSL+GA A +G ++PA YF+ I+ GTF+K LD   L
Sbjct: 835 IQFSGLIVPRSSLEGAAAVMGQLFPAGYFLDIAVGTFTKALDLRQL 880