Pairwise Alignments

Query, 335 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  164 bits (415), Expect = 3e-45
 Identities = 98/331 (29%), Positives = 175/331 (52%), Gaps = 27/331 (8%)

Query: 1   MLRFLTIRVASAIPVLLILSVVTFAIIQAPPGDYADYIRSQLMNQGGASFEQAEAQAQAY 60
           ML+F+  R+  AIP +L+L  ++F +++  PG+     R              E  A   
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPL----------PPEVMANI- 49

Query: 61  RIEHGLDKPLVIQYFNWIGGIITRGDFGYSFYYNK-PVADVVGERLPRTIALALVCHIFA 119
             ++GLDKP+  QY  ++  I+ +GDFG SF Y    V +++   LP ++ + L   +F 
Sbjct: 50  NAKYGLDKPVSEQYLTYLTNIV-QGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFT 108

Query: 120 SVLGIAFGIWAATRQYSWVDNLLSTIAFLGMTIPRFLMALILVYLMVFHFDVSEIGSFFS 179
            ++G+  G  AA +Q +W+D  + + A LG+ +P F++A +L+Y+    F +   G    
Sbjct: 109 VIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG--- 165

Query: 180 PQYGGAPWSWGKFVDLVSHVWPVVAIAVFGGLAYNMRVMRGNLLDTLNAQYVETARAKGL 239
                  W  G F  +     PV+ +++   +A   R+ RG++++TLN+ ++ TARAKGL
Sbjct: 166 -------WQDGGFEYMAL---PVLGMSLLY-VATFARITRGSMIETLNSNFIRTARAKGL 214

Query: 240 SEGAVIMRHAVPNAVHPLVMYQGVVLPYMLSGEIETAIIFALPTVGPAIVGSMAVGDVYV 299
           S G ++++HA+  A+ P+V Y G     +++G +    IF LP +G   V +    D  +
Sbjct: 215 SYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSL 274

Query: 300 TATFMMVLAATLIVGNIIADMLLAMLDPRVR 330
                +++    I+ N I D+LLA +DP++R
Sbjct: 275 VMGVTILIGFLFILFNAIVDILLAYIDPKIR 305