Pairwise Alignments

Query, 335 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 343 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  160 bits (406), Expect = 3e-44
 Identities = 104/334 (31%), Positives = 173/334 (51%), Gaps = 10/334 (2%)

Query: 1   MLRFLTIRVASAIPVLLILSVVTFAIIQAPPGDYADYIRSQLMNQGGASFEQAEAQAQAY 60
           MLR +  ++A  + V   +++++F +I   PG   D   +     G  + ++ EA     
Sbjct: 4   MLRRMARKLAWMLFVFWGITIISFWVIHLAPGSPTDMQTTMNPLAGAETRKRLEAL---- 59

Query: 61  RIEHGLDKPLVIQYFNWIGGIITRGDFGYSFYYN-KPVADVVGERLPRTIALALVCHIFA 119
              +GLDKPL +QY  W+G + +R DFG S   + +PV D + ERLP T+ + +   +  
Sbjct: 60  ---YGLDKPLHVQYVQWLGRL-SRLDFGNSMSSDPRPVWDKIKERLPLTVGMNVASLVLT 115

Query: 120 SVLGIAFGIWAATRQYSWVDNLLSTIAFLGMTIPRFLMALILVYLMVFHFDVSEIGSFFS 179
            +  I  G+ +A  Q    D  ++ + F+G  +P F +AL+L+ L   H     +    S
Sbjct: 116 MLCAIPIGVASAHWQGRLFDRAMTVLVFIGFAMPGFWLALLLMLLFGIHLQWLPLSGLTS 175

Query: 180 PQYGGAPWSWGKFVDLVSHVWPVVAIAVFGGLAYNMRVMRGNLLDTLNAQYVETARAKGL 239
             +  A    GK  D+++H+   + I  FG LA   R MR ++L+ L   Y+ TARAKGL
Sbjct: 176 LDHA-AMSPMGKAWDIMAHLAMPIFIYTFGSLAGLSRFMRASMLEVLRQDYILTARAKGL 234

Query: 240 SEGAVIMRHAVPNAVHPLVMYQGVVLPYMLSGEIETAIIFALPTVGPAIVGSMAVGDVYV 299
               VI RHA+ NA+ P++   G+ LP ++ G +    IFALP +G     ++   D  +
Sbjct: 235 PVRTVIFRHALRNALLPVITILGLSLPGLIGGSVIIESIFALPGLGQLFYQAVMARDYPL 294

Query: 300 TATFMMVLAATLIVGNIIADMLLAMLDPRVREFG 333
               +++ A   +VGN++AD+   + DPR+R  G
Sbjct: 295 IMGNLVLGAVLTLVGNLLADLCYGLADPRIRLTG 328