Pairwise Alignments

Query, 335 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 328 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  159 bits (402), Expect = 9e-44
 Identities = 100/335 (29%), Positives = 186/335 (55%), Gaps = 21/335 (6%)

Query: 1   MLRFLTIRVASAIPVLLILSVVTFAIIQAPPGDYADYIRSQLMNQGGASFEQAEAQAQAY 60
           ML F+  RV  +I VLL++ +V F++ +   GD  D +  Q         E+     +  
Sbjct: 1   MLAFIIRRVVQSIIVLLVVGLVAFSMFRFV-GDPIDGLLGQ---------ERTIEDIERL 50

Query: 61  RIEHGLDKPLVIQYFNWIGGIITRGDFGYSFYYNKPVADVVGERLPRTIALALVCHIFAS 120
           R + GLD P ++QY++++     +GD G S+  ++PVA+++ ER P T+ LALV  + A 
Sbjct: 51  RAQLGLDDPFLVQYWDFLSRAF-QGDLGISYRQSRPVAEILLERAPATLELALVSGVLAI 109

Query: 121 VLGIAFGIWAATRQYSWVDNLLSTIAFLGMTIPRFLMALILVYLMVFHFDVSEIGSFFSP 180
             GI  GI+ A R+  +  + + +I+ +G+++P FL+ ++L+Y  VF  +++ + SF   
Sbjct: 110 FFGIVLGIFTAIRRDGFAASAIMSISLIGVSLPTFLIGILLIY--VFAVELNWLPSFGRG 167

Query: 181 QY---GGAPWSWGKFV--DLVSHVWPVVAIAVFGGLAYNMRVMRGNLLDTLNAQYVETAR 235
           +    GG  W+ G      L + + P + + ++  +   MR++R  +L+ L   Y+  AR
Sbjct: 168 EVVDLGG--WTTGFLTASGLKALILPAITLGLYQ-MTLIMRLVRSEMLEVLRQDYIRFAR 224

Query: 236 AKGLSEGAVIMRHAVPNAVHPLVMYQGVVLPYMLSGEIETAIIFALPTVGPAIVGSMAVG 295
           A+GL+E AV  RHA+ N + P++   G+ L  +++  I T  +F  P VG   + ++   
Sbjct: 225 ARGLTEKAVNFRHALKNTLVPVITVTGLQLGSIIAFAIITETVFQWPGVGLLFINAIQFV 284

Query: 296 DVYVTATFMMVLAATLIVGNIIADMLLAMLDPRVR 330
           D+ V A ++M+++   +  N++ D+L   +DPR+R
Sbjct: 285 DIPVMAAYLMLISVMFVGINLVVDLLYFAIDPRLR 319