Pairwise Alignments

Query, 385 a.a., nolF secretion protein from Agrobacterium fabrum C58

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 89.7 bits (221), Expect = 1e-22
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 16/292 (5%)

Query: 78  GELQPVNRVLIRAREAGKILEMNVREGQAVRAGDMLVRFETDELQSTLLLRQSDRDAAEA 137
           G ++P   V +    AG I ++    G  V     LV  ++        + +++  + EA
Sbjct: 62  GFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS-------AVERANLKSTEA 114

Query: 138 ELMLAMQALARTEQLAAKNIASTEQLDKAKSDVVVKTTRVQSLSSQVDIARLALRNAEIR 197
            L  A     R + L AK   S E  D+A++          +LS+ ++  +  +   EI+
Sbjct: 115 RLPAAKAKYERYKGLFAKGSISKESYDEAEASYY-------ALSADIESLKATIARREIK 167

Query: 198 APFDGTVTRRVAETGARIGADGELLTLVDTSELEAKVLVATRDIPRVARGQTAELEIDGL 257
           APF G +  R    G  +    +++ L DTS +  +  V  RDI R++  Q  ++ +D  
Sbjct: 168 APFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAY 227

Query: 258 AGQIVKGTVERISPVAEDGTRVVAVYLRLANRDGQLWGGMFAGGSILLREKNDALVVPAI 317
                KG++  I P     + ++ V   + N DG+L  GMFA  +I+L +  + + +P  
Sbjct: 228 PQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQT 287

Query: 318 ALRKDETG--YHVLKIQDGHLRRQTVAVGPRWNGGSLIEIGAGLADGETILT 367
           A+     G   +++  ++G  R Q   V       S+  I  G+  G+ ++T
Sbjct: 288 AITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVT 339