Pairwise Alignments

Query, 277 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 296 a.a., Ku domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  118 bits (295), Expect = 2e-31
 Identities = 89/287 (31%), Positives = 143/287 (49%), Gaps = 27/287 (9%)

Query: 4   RASWKGHLSFADFNCEIGLYSALTSAEKISFNIVNRKTGHRVERQYVDSDTGEPVFRDDQ 63
           RA WKG +SF   +  + L SA TS++ + F+ +++++   V  + V+  TG+ V +DD 
Sbjct: 3   RAIWKGAISFGLAHIPVALVSA-TSSQGVDFDWLDKRSMDPVGYKRVNKTTGKEVTKDDI 61

Query: 64  VKGYELDNGDHIVIEGDEIAKLMPDSDKVIHVKHFLPCDEIDKLYFDKSYYLAPTGEDGE 123
           VKG +   G ++++  +EI    P S + I +  F+  ++I     D  Y+LAP  + G 
Sbjct: 62  VKGVQYQKGRYVLLSEEEIRSAHPKSTQTIDIFAFVDSEKIPLQNIDTPYFLAP-DKRGG 120

Query: 124 EALTLLAKAMDDENVVALGEAVLFRRNRILLIRPSGKALVATTLNFSYEVRSETSVFKSI 183
           +   LL + +   + VAL   VL  R  +  + P   ALV   L +  EVR        +
Sbjct: 121 KVYALLRETLVKTHKVALAHVVLHTRQHLAALMPLESALVLVMLRWPAEVR-------DL 173

Query: 184 PDIEFDDEM---------LELAGHIIEKRAGTFDPADYSDRYNDALAELVKAKI-EGR-E 232
             +E  DE+         LE+A  ++E  +  ++P +Y D + D + ELV+ K  EGR E
Sbjct: 174 DVLELGDEVTNPTLAKGELEMAKRLVEDMSADWEPQEYRDSFEDKIMELVEKKANEGRLE 233

Query: 233 IAKPPP----RKEDNIIDLKEALRRSAGAGAGSGKKATSSGRKASRK 275
             +  P    RK  ++IDL E L+RS G+    GK    S  KA  K
Sbjct: 234 AVETDPGEEQRKTADVIDLTELLKRSLGS---KGKATDKSAGKAPAK 277