Pairwise Alignments

Query, 688 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas stutzeri RCH2

 Score =  162 bits (410), Expect = 5e-44
 Identities = 130/442 (29%), Positives = 220/442 (49%), Gaps = 46/442 (10%)

Query: 6   LDKLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLIVN-GADPRRIL 64
           + +LN +Q++AV +          GPLL++AGAGSGKT+ +  ++A+L+   G   R I+
Sbjct: 1   MSRLNPRQQEAVNY--------VGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIQARHIV 52

Query: 65  LMTFSRRAASEMSRRVERICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLNI 124
            MTF+ +AA EM  RV  + K   GA +  +T       TFH +G  ++R    ++G   
Sbjct: 53  AMTFTNKAAREMKERVGSLLK---GAEARGLT-----VSTFHNLGMNIIRKEYARMGYKP 104

Query: 125 DFTIHDRED-SADLMNLVRHEL----GFSKTESRFPTKGTCLAIYSRAV-NSQTPLKD-- 176
            F+I D  D  A L ++++ E     G  + ++   +    L +   A+ N++ P +   
Sbjct: 105 GFSIFDDGDIKALLTDIMQKEYSGDDGADEIKNYIDSWKNDLILPDEALANARNPKEQTA 164

Query: 177 -ILRQHYPWVADWQSELKELFAAYVEAKQIQNVLDYDDLLLYWAQMVSDPI-LADDIGNR 234
            I+  HY      Q  LK    AY       N +D++DL+L   ++  +   + +   NR
Sbjct: 165 AIVYLHY------QRTLK----AY-------NAVDFNDLILLPVKLFQEHADILEKWQNR 207

Query: 235 FDHVMVDEYQDTNRLQASVLMAMKPGGRGLTVVGDDAQSIYSFRAATVRNILDFPACFNP 294
             +++VDEYQDTN  Q  ++  +       TVVGDD QSIY++R A   N++     + P
Sbjct: 208 IRYLLVDEYQDTNASQYLLVKLLVGMRNQFTVVGDDDQSIYAWRGARPENLMLLKEDY-P 266

Query: 295 AADIITLDRNYRSTQPILAAANGVIDLARERFTKNLWTERQSLERPKLVTVKDETEQANF 354
           +  ++ L++NYRST  IL  AN +I      F K LW+E    +  +++  ++E  +   
Sbjct: 267 SLKVVMLEQNYRSTSRILKCANILIANNPHVFEKQLWSEMGHGDEIRVIRTRNEDAECER 326

Query: 355 IIDQILANR-ETGTTLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDM 413
           +  +IL     T       A+L+R +  +  +E++L    IP+   GG  F     VKD+
Sbjct: 327 VALEILTEHLRTQRPYSDFAILYRGNYQAKLMELKLQHHQIPYRLSGGTSFFARQEVKDL 386

Query: 414 LAVLRFAQNPRDRVAGFRLLQM 435
           ++  R   NP D  A  R++ +
Sbjct: 387 MSYFRLLVNPDDDNAFLRVINV 408



 Score = 48.9 bits (115), Expect = 8e-10
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 562 LSLSTIHSAKGQEWRSVFILNVVDGCIPSDLGVGTSQELEEERRLLYVAMTRAKDNLSL 620
           + + T+H++KG E+ SV+I+   +  +P    +  S  +EEERRL YV +TRAK NL+L
Sbjct: 553 VQMMTMHASKGLEFPSVYIIGFEEEILPHRSSI-ESDTIEEERRLAYVGITRAKRNLAL 610