Pairwise Alignments

Query, 688 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

 Score =  208 bits (529), Expect = 8e-58
 Identities = 187/649 (28%), Positives = 306/649 (47%), Gaps = 73/649 (11%)

Query: 8   KLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLIVN-GADPRRILLM 66
           KLN +Q +AV++         +GP L++AGAGSGKT  + +++A+L+   G   R I  +
Sbjct: 2   KLNPRQDEAVKY--------VSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAV 53

Query: 67  TFSRRAASEMSRRVERICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLNIDF 126
           TF+ +AA EM  RV +   +  G +  +M        TFH +G  ++R   + +GL   F
Sbjct: 54  TFTNKAAREMKERVAQTLGK--GESRGLMV------STFHTLGLNIIRREFKALGLKAGF 105

Query: 127 TIHDREDS-ADLMNLVRHELGFSKTESRFPTKGTCLAIYSRAVNSQTPLKDILRQHYPWV 185
           ++ D +D  A L  L   +L   K   R         + S   N +  +    +      
Sbjct: 106 SLFDDQDQLALLKELTEKQLDGDKDLLRL--------LLSTISNWKNDMLTPPQAKAMAK 157

Query: 186 ADWQSELKELFAAYVEAKQIQNVLDYDDLLLYWAQMV-SDPILADDIGNRFDHVMVDEYQ 244
            + Q      F  Y +  Q  N LD+DDL+L    ++ S+  +     NR  +++VDEYQ
Sbjct: 158 GEQQLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQ 217

Query: 245 DTNRLQASVLMAMKPGGRG-LTVVGDDAQSIYSFRAATVRNILDFPACFNPAADIITLDR 303
           DTN  Q   L+ +  G RG LTVVGDD QSIYS+R A  +N++     F P+  +I L++
Sbjct: 218 DTNTSQYE-LVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDF-PSLKLIKLEQ 275

Query: 304 NYRSTQPILAAANGVIDLARERFTKNLWTERQSLERPKLVTVKDETEQANFIIDQILANR 363
           NYRST  IL AAN +I      + K L++E    E+ K++   +E  +A  +I +I+A++
Sbjct: 276 NYRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHK 335

Query: 364 ETG-TTLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQN 422
               T  +  A+L+R +  S  +E  LT+  +P+   GG  F   A +KD++A LR   N
Sbjct: 336 FLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVN 395

Query: 423 PRDRVAGFRLLQMLP-----------------------------GIGPKKAGNILDTIAP 453
           P D  A  R++                                 G+    +G  L+ +  
Sbjct: 396 PDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRR 455

Query: 454 DPEPLLALAEIPPPPKTGDDWTAFTQLLVGLRRGPNGWPGEIGLARLWYEPHLERIHEDA 513
             E L+A+A+     + G+   A   L+  +R     W  E   +    E  ++ + +  
Sbjct: 456 FTEWLVAIAD---NAERGNTVEAVRALVRDIRY--EDWLYETSASPKAAEMRMKNVSDLY 510

Query: 514 DTRKADLQQLEQIAGGYP-SRERFLTELTLDPPDATSDQAGVPLLDEDYLSLSTIHSAKG 572
               ADL+      G  P  +E+ L E+          + G    D D + L T+H++KG
Sbjct: 511 SWIVADLE------GDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKG 564

Query: 573 QEWRSVFILNVVDGCIPSDLGVGTSQELEEERRLLYVAMTRAKDNLSLI 621
            E+  V+++   +G +P    +   + +EEERRL+YV +TRA+  L+ I
Sbjct: 565 LEFPYVYLIGAEEGILPHQTSI-DEENVEEERRLMYVGITRAQRELTFI 612