Pairwise Alignments

Query, 688 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

 Score =  248 bits (632), Expect = 1e-69
 Identities = 215/676 (31%), Positives = 320/676 (47%), Gaps = 88/676 (13%)

Query: 5   YLDKLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLIVNG-ADPRRI 63
           YLD LN  QR AVE           GP+L++AGAG+GKT  L  R+ HL+  G A P  I
Sbjct: 27  YLDGLNPAQRAAVEC--------LEGPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEI 78

Query: 64  LLMTFSRRAASEMSRRVERICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLN 123
           L +TF+ +AA EM  RV  +  Q +        + + W GTFH I  +LLR +AE +GL 
Sbjct: 79  LAVTFTNKAAREMKERVAGMLGQAV--------EGMPWLGTFHSICVKLLRRHAELVGLK 130

Query: 124 IDFTIHDREDSADLMNLVRHELGFSKTESRFPTKGTCLAI---YSRAVN-SQTPLKDILR 179
            +FTI D +D   L+  +    G    + R+P +     I    +RA+  S+ P+ D   
Sbjct: 131 SNFTILDADDQIRLLKQLIKAEGID--DKRWPARMLAGVIDDWKNRALTPSKVPVSDASA 188

Query: 180 QHYPWV---ADWQSELKELFAAYVEAKQIQNVLDYDDLLLYWAQMVSD-PILADDIGNRF 235
            ++  V   A +Q+ LK+L           N +D+ DLLL+   +  D P + +     F
Sbjct: 189 YNHRGVDFYAQYQARLKDL-----------NAVDFGDLLLHMVTIFQDNPDVLEQYQRWF 237

Query: 236 DHVMVDEYQDTNRLQASVLMAMKPGGRGLTVVGDDAQSIYSFRAATVRNILDFPACFNPA 295
             +MVDEYQDTN  Q   L  +    + +  VGDD QSIY +R A V NIL F   F P 
Sbjct: 238 RFIMVDEYQDTNVAQYLWLRLLAGAHKNICCVGDDDQSIYGWRGAEVGNILRFEKDF-PG 296

Query: 296 ADIITLDRNYRSTQPILAAANGVIDLARERFTKNLWTERQSLERPKLVTVKDETEQANFI 355
           A+++ L++NYRST+ IL+AA+GVI     R  K LWTE +  E+ +L+   D  E+A +I
Sbjct: 297 ANVVRLEQNYRSTEHILSAASGVIRGNSGRLGKELWTEARGGEKVRLIGHWDGEEEARWI 356

Query: 356 IDQILANRETGT------TLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAH 409
            ++I A  + GT       L   A+L R S      E       +P+   GG +F +   
Sbjct: 357 GEEIEA-MQRGTRGLAPVDLNNMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLE 415

Query: 410 VKDMLAVLRFAQNPRDRVAGFRLLQM-LPGIGPKKAGNILDTIAPDPEPLL---ALAEIP 465
           ++D +A  R   +P D +A  R++     G+G  KA   + T+A      L   A   + 
Sbjct: 416 IRDAMAYFRQVISPDDDLAFERIVNTPKRGLG-DKAQQTIQTMARSNGVSLVEGARLAVE 474

Query: 466 PPPKTGDDWTAFTQLLVGLRRGPNGWP------------------GEIGLARLWYEPHLE 507
                G    A  QL+  L R    W                    E G   +W      
Sbjct: 475 SGQIKGKGGKALHQLVTDLAR----WGRLAGDADTTHMELAEIILDESGYTTMWQADK-- 528

Query: 508 RIHEDADTRKADLQQLEQIAGGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYLSLSTI 567
             + D+  R  +L++L +    + + + FL  ++L   +   D A         +S+ T+
Sbjct: 529 --NPDSPGRLENLKELVKALEAFENLQGFLEHVSLIMDNDKQDAA-------QKVSIMTL 579

Query: 568 HSAKGQEWRSVFILNVVDGCIPSDLGVGTS--QELEEERRLLYVAMTRAKD--NLSLITP 623
           H+AKG E+ +VF+    DG  PS   +  S  + LEEERRL YV +TRA++   +S    
Sbjct: 580 HAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGLEEERRLAYVGITRAEEICTISFAGN 639

Query: 624 QRFFTGGQSSQGDRHV 639
           +R F   QS    R +
Sbjct: 640 RRVFGQWQSQLPSRFI 655