Pairwise Alignments

Query, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

Subject, 271 a.a., ISSod2, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  149 bits (377), Expect = 5e-41
 Identities = 92/271 (33%), Positives = 132/271 (48%), Gaps = 2/271 (0%)

Query: 1   MVGPAAKRDAVTHLKAVMGLSERRACQIISADRKMIRYRSCRPPE-VELRLRLRDLANER 59
           MV  + ++    H  A   +S R AC          RYR     E  E+   L +L  + 
Sbjct: 1   MVKLSQRKAMAQHAVANRKISIRLACAAFCISETCYRYRRVNDDENAEIAEFLVELTEKE 60

Query: 60  RRFGYRRLFILLRR-DGEPSGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANA 118
             +G+ + F  LR   G      R+YR+Y E  L++R +  RR       P+    KAN 
Sbjct: 61  SDWGFGQCFNYLRNVKGFAWNHKRVYRIYCELALNLRIKPRRRLKRNAPEPLKEPTKANQ 120

Query: 119 RWSLDFVHDQFACGRRFRVLNIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGV 178
            WS+DF+HDQ + GR +R+ N++DD  RE LA     S+   RV R L  L+  R KP  
Sbjct: 121 VWSIDFMHDQLSDGRSYRLFNVIDDFKREGLAIEAGFSLPTMRVIRTLNQLLEGRTKPIA 180

Query: 179 IVSDNGTELTSNAILAWSKDHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLD 238
           I  DNG E  S+    W+K H++   YI PG+P QN Y+E  N  +R   +++ LF  L+
Sbjct: 181 IRCDNGPEFISHEFTEWAKKHEIRIDYIQPGKPQQNAYIERHNKTIRYSWVSKHLFDTLE 240

Query: 239 HARSAIAEWADDYNHFRPHSSLGYQTPAAYA 269
             +    +W   YNH RPH + G + P   A
Sbjct: 241 EVQDYATKWLWFYNHERPHKANGGKPPLMVA 271