Pairwise Alignments

Query, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

Subject, 235 a.a., transposase from Herbaspirillum seropedicae SmR1

 Score =  201 bits (512), Expect = 1e-56
 Identities = 110/234 (47%), Positives = 143/234 (61%)

Query: 14  LKAVMGLSERRACQIISADRKMIRYRSCRPPEVELRLRLRDLANERRRFGYRRLFILLRR 73
           LKA   LSERR C +++    ++RY++       L  R+  LA +RRRFGYRR+ +LL R
Sbjct: 1   LKANWQLSERRCCGLMNISTSVLRYQARGDNNAALTERITTLAGQRRRFGYRRIHVLLLR 60

Query: 74  DGEPSGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFACGR 133
                 V R+YRLY + GLSVR+R  +R  +  R P+L+  +AN  WS+DFVHD+ A GR
Sbjct: 61  RAGWVNVKRVYRLYFKAGLSVRRRLRKRIGMTERLPLLLPEQANYAWSMDFVHDRLADGR 120

Query: 134 RFRVLNIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGVIVSDNGTELTSNAIL 193
           R R LNIVDD T+E +A   DTSISG R+ R L  +   R  P +I  D+G E TS A+ 
Sbjct: 121 RIRCLNIVDDFTKESVAIEVDTSISGLRLGRVLDKVAQERPLPTMIRVDHGPEFTSLALD 180

Query: 194 AWSKDHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDHARSAIAEW 247
           AW+    V   +  PG+P QN Y+ESFNGR RDE LN+ LF  L  AR  I  W
Sbjct: 181 AWAAGRGVKLAFTQPGKPTQNAYIESFNGRFRDECLNDHLFSTLHEARYRIEAW 234