Pairwise Alignments

Query, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

Subject, 274 a.a., ISD1, transposase OrfB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  177 bits (449), Expect = 2e-49
 Identities = 97/251 (38%), Positives = 140/251 (55%), Gaps = 2/251 (0%)

Query: 19  GLSERRACQIISADRKMIRYRSCRPPEVELRLR-LRDLANERRRFGYRRLFILLRRDGEP 77
           GLSERR+C  +   R + RY   +P +  L +  L  LA+   R+G+ +LF +LRR G  
Sbjct: 10  GLSERRSCAALGLSRTVYRYE-LKPRDDSLIIEALLGLADRYPRYGFGKLFAVLRRHGFR 68

Query: 78  SGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFACGRRFRV 137
               R+YR+Y    +++R++  +R       P+ V   AN  WS+DF+HD  A G+RFR 
Sbjct: 69  WNHKRVYRVYCLLKMNLRRKGKKRLPSRNPQPLAVPPCANVCWSIDFMHDALASGQRFRT 128

Query: 138 LNIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGVIVSDNGTELTSNAILAWSK 197
            N++DD +RECLA   DT++   RV R L  ++  RG P  +  DNG EL S  +  W++
Sbjct: 129 FNVLDDFSRECLAIEVDTNLPAARVLRVLDRIVAWRGLPAKLRMDNGPELISVLLADWAE 188

Query: 198 DHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDHARSAIAEWADDYNHFRPH 257
            + V   +I PG+P QN Y+E FN   R+E+L+  LF  L   +     W   YN  RPH
Sbjct: 189 KNGVALEFIQPGKPTQNSYIERFNKTYREEVLDFYLFKSLTEVKEITENWLRQYNEERPH 248

Query: 258 SSLGYQTPAAY 268
            SLG  TPA +
Sbjct: 249 ESLGDLTPAEF 259