Pairwise Alignments

Query, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

Subject, 274 a.a., ISD1, transposase OrfB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  177 bits (449), Expect = 2e-49
 Identities = 95/250 (38%), Positives = 137/250 (54%)

Query: 19  GLSERRACQIISADRKMIRYRSCRPPEVELRLRLRDLANERRRFGYRRLFILLRRDGEPS 78
           GLSERR+C  +   R + RY      +  +   L  LA+   R+G+ +LF +LRR G   
Sbjct: 10  GLSERRSCAALGLSRTVYRYELKPRDDSPIIEALLGLADRYPRYGFGKLFAVLRRHGFRW 69

Query: 79  GVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFACGRRFRVL 138
              R+YR+Y    +++R++  +R       P+ V   AN  WS+DF+HD  A G+RFR  
Sbjct: 70  NHKRVYRVYCLLKMNLRRKGKKRLPSRNPQPLAVPPCANVCWSIDFMHDALASGQRFRTF 129

Query: 139 NIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGVIVSDNGTELTSNAILAWSKD 198
           N++DD +RECLA   DT++   RV R L  ++  RG P  +  DNG EL S  +  W++ 
Sbjct: 130 NVLDDFSRECLAIEVDTNLPAARVLRVLDRIVAWRGLPAKLRMDNGPELISVLLADWAEK 189

Query: 199 HKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDHARSAIAEWADDYNHFRPHS 258
           + V   +I PG+P QN Y+E FN   R+E+L+  LF  L   +     W   YN  RPH 
Sbjct: 190 NGVALEFIQPGKPTQNSYIERFNKTYREEVLDFYLFKSLTEVKEITENWLRQYNEERPHE 249

Query: 259 SLGYQTPAAY 268
           SLG  TPA +
Sbjct: 250 SLGDLTPAEF 259