Pairwise Alignments

Query, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

Subject, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  299 bits (766), Expect = 4e-86
 Identities = 146/258 (56%), Positives = 184/258 (71%)

Query: 11  VTHLKAVMGLSERRACQIISADRKMIRYRSCRPPEVELRLRLRDLANERRRFGYRRLFIL 70
           + H+  V G+S+RRA + ++ DR  +RYRS RP + E R  ++ +A ERRRFGYRR+ ++
Sbjct: 1   MAHVVEVHGVSQRRAGKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVM 60

Query: 71  LRRDGEPSGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFA 130
           L R G    + ++ RLYREE L VR+R  R+RA+GTR P+LV    N  WSLDFV D   
Sbjct: 61  LERQGIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALT 120

Query: 131 CGRRFRVLNIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGVIVSDNGTELTSN 190
            GRRFRVL +VDD +RECLA + DTS+SG RV REL AL+ RRG+P ++VSDNGTELTS 
Sbjct: 121 DGRRFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSV 180

Query: 191 AILAWSKDHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDHARSAIAEWADD 250
           A+L+W +   ++WHYIAPG+PMQNG+VESFNGR RDELLNESLF  L  AR  I  W  D
Sbjct: 181 AVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHD 240

Query: 251 YNHFRPHSSLGYQTPAAY 268
           YNH RPHS LG   P  +
Sbjct: 241 YNHHRPHSGLGNIPPVEF 258