Pairwise Alignments

Query, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

Subject, 231 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  270 bits (689), Expect = 3e-77
 Identities = 132/231 (57%), Positives = 170/231 (73%)

Query: 11  VTHLKAVMGLSERRACQIISADRKMIRYRSCRPPEVELRLRLRDLANERRRFGYRRLFIL 70
           + H+  V G+S+RRA + ++ DR  +RYRS RP + E R  ++ +A ERRRFGYRR+ ++
Sbjct: 1   MAHVVEVHGVSQRRAGKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVM 60

Query: 71  LRRDGEPSGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFA 130
           L R G    + ++ RLYREE L VR+R  R+RA+GTR P+LV    N  WSLDFV D   
Sbjct: 61  LERQGIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALT 120

Query: 131 CGRRFRVLNIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGVIVSDNGTELTSN 190
            GR+FRVL +VDD +RECLA + DTS+SG RV REL AL+ RRG+P ++VSDNGTELTS 
Sbjct: 121 DGRQFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSV 180

Query: 191 AILAWSKDHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDHAR 241
           A+L+W +   ++WHYIAPG+PMQNG+VESFNGR RDELLNESLF  L  AR
Sbjct: 181 AVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAR 231