Pairwise Alignments

Query, 587 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  353 bits (907), Expect = e-102
 Identities = 195/572 (34%), Positives = 330/572 (57%), Gaps = 11/572 (1%)

Query: 20  ENFKK---HVGWYSAAIV----AMLLVAGTTSLSAWIMRDIVNSVYLKQGFDVVLEIAFA 72
           + FK+   ++  Y A +V    A+++ A   +    +++ +++  +     + +  + F 
Sbjct: 11  QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFM 70

Query: 73  VAAIFIVKGLATFVQSYYLSKAGNSIVAEQQRKIYDRLLKQGVSFFQNLPSSELLVRVTY 132
           +  +  V+GL+ F  SY LS    ++V + +R++++  +   V FF    +  LL R+TY
Sbjct: 71  ILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITY 130

Query: 133 NAQAARSVIDTIVTSFVRDLFSLLGLIIVMFAQNFLLSAISMIIGPVAIFSVRLVLRRVR 192
           +++         + S VR+  S++GL+ +MF  ++ LS + +++ PV  F++  V +R R
Sbjct: 131 DSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFR 190

Query: 193 KIMEAELASLGEIVNVVQETSIGVRVIKAFSLEKLMRQRMNKAVSDVEHRANGIAKLEAA 252
           KI      ++G + +  ++   G +V+ ++  +++ R+R +K  + +  +   +   ++ 
Sbjct: 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI 250

Query: 253 TSPIMETLSGLAIAVVIAVSGYTVLEKGGSPGDLMAFITALLLAYEPAKRLARMRVQIEG 312
             P+++ ++ LA+  V+ ++    +    +PG      +A+     P K L  +  + + 
Sbjct: 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQR 310

Query: 313 GMIGVRMMFEVLDAPLTLAEKKDAQPLPKASGNVELKNVSFEYVANQ-PVLKDVSVLFEG 371
           GM   + +F ++D  L            + +G V++K+V+F Y   + P L  VS     
Sbjct: 311 GMAACQTLFGLMD--LETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQ 368

Query: 372 GKMTALVGPSGSGKSTIINLMMRLYDPQSGSVEINGMDLRDVSFASLREHVSYVGQETFL 431
           GK  ALVG SGSGKSTI NL  R YD  SGS+ ++G D+RD    +LR H + V Q   L
Sbjct: 369 GKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428

Query: 432 FSGTVKHNISVGRDNA-TDEEIIAAAKAANAHDFIMNMPDGYDSKLGENGSGLSGGQRQR 490
           F+ T+ +NI+   +   T E+I  AA+ A+A +FI NMP G D+ +GENG+ LSGGQRQR
Sbjct: 429 FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQR 488

Query: 491 VAIARAMLRDADILILDEATSALDSESEALVRDALERLTLNKTSIVIAHRLSTINRADKI 550
           VAIARA+LRDA +LILDEATSALD+ESE  ++ AL+ L  NKT +VIAHRLSTI +AD+I
Sbjct: 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEI 548

Query: 551 VVMDNGQVVEQGSRRELLATDGLYKRLHSIQF 582
           +V+D G+++E+G   +LLA DG Y +LH IQF
Sbjct: 549 LVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580