Pairwise Alignments

Query, 330 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

Subject, 335 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 64.3 bits (155), Expect = 4e-15
 Identities = 80/305 (26%), Positives = 125/305 (40%), Gaps = 35/305 (11%)

Query: 8   FARLVAGATFLASAAFAHAEGTVVVYSAAPQQLMDELLPLFEKKTGTKVELVKAGSGELM 67
           F + +A   F    + A+A  ++ VYS     L+D +L  F K+TG KV LV    G + 
Sbjct: 3   FMKRLAVLGFACVTSMANAADSITVYSYRQAFLIDPILADFTKETGIKVNLVFTKQG-IA 61

Query: 68  NRIKAETGKAAGDVIWSVDGTVIDFSAD--LFEPYKPVEAASINPA--FSPSTNWVPFTA 123
            RI  E   +  D++ + D + +   AD  L         A   PA   SP+ +W   T 
Sbjct: 62  ERIAREGRLSPADLVLTSDFSRLMELADKGLVASVDSQTLAQNIPANLRSPNGDWFALTK 121

Query: 124 VVTAFIVNKEALKGAPVPTSWADLAKPEYKGLISSARADQSGSAYIQMATVLQDFDSEEK 183
            V     +KE L   P+   + DLA P++KG I +       +  +  + +    +++ K
Sbjct: 122 RVRNIYSSKERL--GPLDIDYEDLADPKFKGKICTRSGKHPYNISLVASMIAHHGEADTK 179

Query: 184 GWEIYTGILGNSVLSTSSGAVPRFVNDGEQ--AVGITLEDAAL--RYKLG---------- 229
            W    G+  N              ND  Q  AV   L D A+   Y LG          
Sbjct: 180 TW--LEGVKANLARKPQG-------NDRAQVKAVKEGLCDIAIGNSYYLGKMLQDPKQVP 230

Query: 230 -SAPVEIVYPKE---GTAIAPDGMALVKGGPNSENGKAFIDFIVSKEAQEVVVKAGRR-S 284
            +  V I +P +   G  I   GMAL K  P  EN    ++++  ++AQ+   +      
Sbjct: 231 WAEAVNINFPNQKNRGAHINVSGMALAKYAPERENAIKLMEYLSGQQAQQTYAELNMEYP 290

Query: 285 VRTDV 289
           V+ DV
Sbjct: 291 VKADV 295