Pairwise Alignments

Query, 330 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

Subject, 343 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

 Score =  136 bits (342), Expect = 9e-37
 Identities = 100/326 (30%), Positives = 153/326 (46%), Gaps = 13/326 (3%)

Query: 5   CTIFARLVAGATFLASAAFAHAEGTVVVYSAAPQQLMDELLPLFEKKTGTKVELVKAGSG 64
           C +   + AG T   ++  +  E  V VY A     +D +   FEK TG K+E V   SG
Sbjct: 12  CVMAVLVFAGCTEQQASNVSQEEQIVTVYVAYGS--LDLIADEFEKDTGIKMEYVSLSSG 69

Query: 65  ELMNRIKAETGKAAGDVIWSVDGTVIDFSAD---LFEPYKPVEAASINPAFSPSTN-WVP 120
           E ++R+KAE    + DV W   G     SA    L E YK   A  I+P F      W  
Sbjct: 70  EALSRLKAEQSNPSADV-WLGGGIDAFISAQQDGLLEAYKSPNAKDIDPLFVEEDGYWTG 128

Query: 121 FTAVVTAFIVNKEAL--KGAPVPTSWADLAKPEYKGLISSARADQSGSAYIQMATVLQDF 178
            + V    + N + L  KG P P +W DL   +YKG + ++    SG+AY  +  +LQ +
Sbjct: 129 VSLVTIGILENTDLLSEKGLPEPQTWDDLITDDYKGELIASNPTVSGTAYFTICGILQMY 188

Query: 179 DSEEKGWEIYTGILGNSVLSTSSGAVP-RFVNDGEQAVGITLEDAALRYKLGSAPVEIVY 237
             E++GW        N+   T  G+ P   V  GE A G+  +           PV+ V+
Sbjct: 189 -GEDEGWNYLDKFYQNTPFLTKRGSGPGNLVTAGEYAYGVAPDPHTTVIADSELPVKSVF 247

Query: 238 PKEGTAIAPDGMALVKGGPNSENGKAFIDFIVSKEAQEVVVKAGRR-SVRTDVPANVALV 296
             +     P  +++V G  + EN K F+D+ +SKE QEV+++A  R  VR D+     + 
Sbjct: 248 LNK-VIWWPSPVSIVSGAKHPENAKIFVDWCLSKEGQEVLMQASPRVPVRGDIEVIEGVP 306

Query: 297 PLSDVPDAKYDFKWAADNRSRLMEKW 322
              D+     DF +  +NR R++++W
Sbjct: 307 NPKDLDFLDMDFMYWGENRDRILDEW 332