Pairwise Alignments

Query, 307 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

Subject, 317 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  125 bits (315), Expect = 1e-33
 Identities = 88/302 (29%), Positives = 156/302 (51%), Gaps = 9/302 (2%)

Query: 5   LMATALCIFATPALAE-TRIAVSMTSFDNPFLTILLNGIRAEAGRDKNIELLVEDAQLDP 63
           ++A  L    +PA A   +I ++  +   P+  I ++   ++  +  N+ELLV+DAQ   
Sbjct: 13  VLAAGLTFQLSPAFAAGEKILINFQTLSIPYF-IYMHEQASQEAKVLNVELLVQDAQSSS 71

Query: 64  SKQLNQVQNFIANGVDAIIVNAVDGDATAAITKAASAAKIPLVYVNHPPAELETGLPDGT 123
           +KQ + V+N +  GVDA++V   D  A A       + K+PLV V+      +T +P   
Sbjct: 72  TKQSSDVENALTQGVDAMVVAPNDVTALAPALNEVLSEKVPLVTVDRRVEGTDTPVP--- 128

Query: 124 AFVGSNELDSGTMEAEAACKLMGGKGKAVILMGPLENHAALVRTKDVETVFSKPECKIEI 183
            +V ++ +  G + AE     M    +   + G   +  A+ R K V         K ++
Sbjct: 129 -YVTADSVAGGRLMAELVTSNMKNGARVAFIGGTPGSSTAIDRAKGVHEGLKAGGGKFQL 187

Query: 184 LEKQTANWSRTQAQDLVSSWLT--AGIQFDAVIANNDEMAIGAAQALKAAGVSMKDVVIA 241
           + +Q+  W R +A  +  + LT  +    DA+I  + +MA+GAA+A++A G+  K V + 
Sbjct: 188 VAEQSGEWERAKAMSVAENILTSLSANPPDAIICASGDMALGAAEAVRATGLKGK-VKVI 246

Query: 242 GIDATPDGLAAMQAGDLDITVYQNATKQGEVSVQTAVKAAAGQSTEKTLWVPFELVTPEN 301
           G DA P+ L A++ GD+   V Q+ +KQ   +++ AVK   G+   +T+ V   ++TPEN
Sbjct: 247 GFDAYPEVLRAIRDGDIAGIVEQSPSKQIRTALRMAVKKVRGEGELETVIVQPFMITPEN 306

Query: 302 MS 303
           +S
Sbjct: 307 LS 308