Pairwise Alignments

Query, 307 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Rahnella sp. WP5

 Score =  132 bits (333), Expect = 8e-36
 Identities = 93/301 (30%), Positives = 148/301 (49%), Gaps = 14/301 (4%)

Query: 1   MKKLLM----ATALCIFATPALAETRIAVSMTSFDNPFLTILLNGIRAEAGRDKNIELLV 56
           MKKL +    A     F+   LA+  IA+ +++ +NPF   + +G + EA +     L+V
Sbjct: 3   MKKLAVWVSAAAITASFSANVLAKDTIALVVSTLNNPFFVSMKDGAQKEADK-LGYNLVV 61

Query: 57  EDAQLDPSKQLNQVQNFIANGVDAIIVNAVDGDATAAITKAASAAKIPLVYVNHPPAELE 116
            D+Q +P+K+L  VQ+    G   +++N  D DA       A+ AKIP++ ++    +  
Sbjct: 62  LDSQNNPAKELANVQDLTVRGTKLMLINPTDSDAVGNAVAMANQAKIPVITLDRQATKGV 121

Query: 117 TGLPDGTAFVGSNELDSGTMEAEAACKLMGGKGKAVILMGPLENHAALVRTKDVETVFSK 176
                  + V S+    G M  +   K +G   K + L G      A  R K       K
Sbjct: 122 VA-----SHVASDNAFGGKMAGDYIAKKLGENAKVIELEGIAGTSVARERGKGFAQAAEK 176

Query: 177 PECKIEILEKQTANWSRTQAQDLVSSWLTAGIQFDAVIANNDEMAIGAAQALKAAGVSMK 236
                +IL  Q A++ RT+  +++ + LTA     AV A NDEMA+GA +AL+ AG +  
Sbjct: 177 HH--FQILASQPADFDRTKGLNVMQNLLTAHQDVQAVFAQNDEMALGALRALQTAGKT-- 232

Query: 237 DVVIAGIDATPDGLAAMQAGDLDITVYQNATKQGEVSVQTAVKAAAGQSTEKTLWVPFEL 296
           DV++ G D T DG+ A+ +G +  TV Q   + G + VQTA K   G+     + V  +L
Sbjct: 233 DVLVVGFDGTDDGIKAVNSGKMGATVAQRPEQIGVIGVQTADKVLKGEKVPAVIPVDLKL 292

Query: 297 V 297
           V
Sbjct: 293 V 293