Pairwise Alignments

Query, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 542 a.a., peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  428 bits (1100), Expect = e-124
 Identities = 250/563 (44%), Positives = 349/563 (61%), Gaps = 49/563 (8%)

Query: 9   LLSVEGLSVEFGDS--RVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGATY 66
           LL+V GLS+E   +  +VV  +SF + PG    +VGESGSGK+   L+T  L  ++  T 
Sbjct: 6   LLTVCGLSLEVARTGQQVVKSVSFDLAPGEIFGIVGESGSGKT---LATRALISLLPPTI 62

Query: 67  PT--GKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEK 124
               G + ++G+D+LK  + E+R +RG EI ++FQEPMTSLNP  TIG Q+ E L+LH  
Sbjct: 63  KVADGSVSYKGRDVLKMKENELRHLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHT- 121

Query: 125 LGKTAAMEQAKQLLDMVR---LPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIAD 181
             K +A E+   +LDM++   + D    L  YPH+ SGGMRQR+M+A  +  +P LLIAD
Sbjct: 122 --KASAQERRSLILDMLKRVGIRDPEGALSSYPHEFSGGMRQRIMLASVMLLKPALLIAD 179

Query: 182 EPTTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPV 241
           EPTTALD  IQ  ++ +M +L +  G  ++ I+HD+ +VA     +VVM KG  VE+G  
Sbjct: 180 EPTTALDAVIQRDVMELMVELTRAEGTAILLISHDLPMVARYTSRIVVMEKGAIVEKGRT 239

Query: 242 KDIFANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQ 301
           +D+   PQHPYT+ LLS++P  G       P+++ LT +                     
Sbjct: 240 EDLLKAPQHPYTKKLLSSLPFRGR------PRQIDLTSV--------------------- 272

Query: 302 KPLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTI 361
            P++S +D+ V +  RK+LF K   +  A+  VS DIH GE +ALVG SGSGK+T+GRTI
Sbjct: 273 -PMISARDIIVDYAGRKSLFRKNKPK-RALHGVSIDIHEGEVVALVGGSGSGKTTLGRTI 330

Query: 362 QQLQTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPIN- 420
             L T   G I F GR  ++     R       Q +FQDP++SLDPR T+   + E +  
Sbjct: 331 AGLVTESEGRIQFQGRPRTENWTDYRL----NCQMVFQDPYSSLDPRMTIEALVEEALRP 386

Query: 421 THGLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIAD 480
             GL  D KA R+R  E LE VGL  ++A RYPHE SGGQRQRV IARA+A  P+ +IAD
Sbjct: 387 VPGL--DGKAKRKRTLETLEEVGLGVDYAGRYPHELSGGQRQRVAIARAIARRPRFLIAD 444

Query: 481 EALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSR 540
           E +SALDV+++AQ+++LF DLQ   G + LFISHD+ VVE+++ RV V+  G+I+E G R
Sbjct: 445 EPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDR 504

Query: 541 QQVFETPTHDYTRRLLSAVPVAD 563
             +F++P   YTRRLLSA+P  D
Sbjct: 505 DTIFDSPKEAYTRRLLSAIPALD 527



 Score =  167 bits (424), Expect = 8e-46
 Identities = 102/245 (41%), Positives = 143/245 (58%), Gaps = 12/245 (4%)

Query: 23  RVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGATYPTGKILFEGKDLLKAS 82
           R +  +S  +  G  VA+VG SGSGK+    +   L      T   G+I F+G+      
Sbjct: 298 RALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLV-----TESEGRIQFQGRP----- 347

Query: 83  QKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEKLGKTAAMEQAKQLLDMVR 142
           + E  +       M+FQ+P +SL+P  TI   + E L     L   A  ++  + L+ V 
Sbjct: 348 RTENWTDYRLNCQMVFQDPYSSLDPRMTIEALVEEALRPVPGLDGKAKRKRTLETLEEVG 407

Query: 143 LPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPTTALDVTIQAQILNIMRDL 202
           L    +   RYPH+LSGG RQRV IA A+A RP+ LIADEP +ALDVT++AQ+L++  DL
Sbjct: 408 L--GVDYAGRYPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDL 465

Query: 203 QKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDIFANPQHPYTRALLSAVPR 262
           QK+ G   +FI+HD+GVV ++AD VVVM  G+ +EEG    IF +P+  YTR LLSA+P 
Sbjct: 466 QKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSAIPA 525

Query: 263 LGSME 267
           L   E
Sbjct: 526 LDQNE 530