Pairwise Alignments

Query, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  466 bits (1198), Expect = e-135
 Identities = 246/556 (44%), Positives = 356/556 (64%), Gaps = 30/556 (5%)

Query: 9   LLSVEGLSVEF----GDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGA 64
           LL V+ L+V+F    G  R    +SF V+ G T+ ++GESGSGKSV++ + M L D    
Sbjct: 6   LLEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTPPG 65

Query: 65  TYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEK 124
               G + + G+DL   S+ E R + G+ IAMIFQ+P++ LNPV+TIG Q+ EV  +H  
Sbjct: 66  DICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVFTVHGV 125

Query: 125 LGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPT 184
                A ++A ++L  V +P+  + + +YPHQ SGG RQR+MI MA+A RP++LIADEPT
Sbjct: 126 ASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILIADEPT 185

Query: 185 TALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDI 244
           TALDV++QAQIL +++ LQ + G+ ++ ITHD+ V A MAD V+VM  G+ VEEG  + +
Sbjct: 186 TALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEGEARAV 245

Query: 245 FANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQKPL 304
           F NP H YTR L++A+P     +  A P+                       A+   KP+
Sbjct: 246 FENPAHSYTRTLINALPH---ADDRAPPR----------------------PARPAGKPI 280

Query: 305 LSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQL 364
           L VK++   + +    F K   RL AV+ +SFD+ AGET+ +VGESGSGKST+ R +  L
Sbjct: 281 LEVKNIDKFYTLSSGFFAKPA-RLHAVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGL 339

Query: 365 QTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTHGL 424
             A  GE  F+GR   +M   +    R++VQ +FQDP++S++PR TV   ++EP   H  
Sbjct: 340 NEASGGEALFHGRDVLKMDRKQLLAFRRKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKD 399

Query: 425 INDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEALS 484
           I ++   R RV ELL  VGL+ EHA RYPH+FSGGQRQR+ IARALA DP+L++ DEA+S
Sbjct: 400 ILEKTRWRDRVTELLGLVGLNPEHAKRYPHQFSGGQRQRIAIARALACDPELVVCDEAVS 459

Query: 485 ALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQVF 544
           ALDVS+Q Q+I+L  +L+   GLAY+FI+HD+ +V   + R+ V+  G+I+E  + +++F
Sbjct: 460 ALDVSVQVQVIDLLAELRDRLGLAYIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIF 519

Query: 545 ETPTHDYTRRLLSAVP 560
             P H YTR+L++A P
Sbjct: 520 RNPQHAYTRQLINATP 535



 Score =  198 bits (503), Expect = 6e-55
 Identities = 121/281 (43%), Positives = 164/281 (58%), Gaps = 16/281 (5%)

Query: 304 LLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQ 363
           LL VKDL V F      F        A   VSF + AGETL ++GESGSGKS     I  
Sbjct: 6   LLEVKDLTVDFLSLGGAF-------RATSGVSFHVDAGETLVILGESGSGKSVSASAIMG 58

Query: 364 LQTAVSGEI-----AFNGRSYSQMSAAERFRMR-QEVQYIFQDPFASLDPRKTVGFSIAE 417
           L     G+I     A+ GR  S +S  ER  +  + +  IFQDP + L+P  T+G+ + E
Sbjct: 59  LIDTPPGDICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEE 118

Query: 418 PINTHGLINDQKAVRRRVDELLERVGLSS--EHAARYPHEFSGGQRQRVCIARALASDPK 475
               HG+ +  +A R+R  E+L RVG+    +   +YPH+FSGGQRQR+ I  A+A  P+
Sbjct: 119 VFTVHGVASGAEA-RQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPE 177

Query: 476 LIIADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIM 535
           ++IADE  +ALDVS+QAQI+ L   LQAE GLA + I+HD+ V   M+ RV V+  G+I+
Sbjct: 178 ILIADEPTTALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIV 237

Query: 536 ELGSRQQVFETPTHDYTRRLLSAVPVADPTIERRIAMIEGE 576
           E G  + VFE P H YTR L++A+P AD     R A   G+
Sbjct: 238 EEGEARAVFENPAHSYTRTLINALPHADDRAPPRPARPAGK 278



 Score =  194 bits (494), Expect = 6e-54
 Identities = 102/240 (42%), Positives = 158/240 (65%), Gaps = 11/240 (4%)

Query: 25  VDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGATYPTGKILFEGKDLLKASQK 84
           V ++SF V  G T+ +VGESGSGKS  +   + L +  G     G+ LF G+D+LK  +K
Sbjct: 306 VKNLSFDVAAGETIGIVGESGSGKSTVARVLLGLNEASG-----GEALFHGRDVLKMDRK 360

Query: 85  EMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEK-LGKTAAMEQAKQLLDMVRL 143
           ++ + R K + M+FQ+P +S+NP  T+ D + E   +H+  L KT   ++  +LL +V L
Sbjct: 361 QLLAFRRK-VQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDILEKTRWRDRVTELLGLVGL 419

Query: 144 -PDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPTTALDVTIQAQILNIMRDL 202
            P+ A+   RYPHQ SGG RQR+ IA ALAC P+L++ DE  +ALDV++Q Q+++++ +L
Sbjct: 420 NPEHAK---RYPHQFSGGQRQRIAIARALACDPELVVCDEAVSALDVSVQVQVIDLLAEL 476

Query: 203 QKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDIFANPQHPYTRALLSAVPR 262
           + +LG+  +FITHD+ +V   AD ++VM  G+ VE    ++IF NPQH YTR L++A P+
Sbjct: 477 RDRLGLAYIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRNPQHAYTRQLINATPK 536