Pairwise Alignments

Query, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 536 a.a., oligopeptide/dipeptide ABC transporter, ATP-binding protein from Phaeobacter inhibens DSM 17395

 Score =  464 bits (1195), Expect = e-135
 Identities = 261/554 (47%), Positives = 346/554 (62%), Gaps = 37/554 (6%)

Query: 9   LLSVEGLSVEFGD----SRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGA 64
           LLSV  L V F      +  V  +SF V  G TVA+VGESGSGKSV++LST+ L  +  +
Sbjct: 14  LLSVRDLRVSFRQDGKVTEAVRGVSFSVGRGETVALVGESGSGKSVSALSTVSL--LGDS 71

Query: 65  TYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEK 124
              +G + ++G +++ AS++ +R +RG +I+ IFQEPMTSLNP+ TI  Q+ E L LH+ 
Sbjct: 72  ATVSGSVTYDGTEMVGASERHLRQVRGNDISFIFQEPMTSLNPLHTIEKQLAESLALHQG 131

Query: 125 LGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPT 184
           LG  AA E+   LL+ V + DA   L  YPHQLSGG RQRVMIAMALA +P +LIADEPT
Sbjct: 132 LGGAAARERIVDLLNRVGIRDAETRLDAYPHQLSGGQRQRVMIAMALANKPDILIADEPT 191

Query: 185 TALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDI 244
           TALDVTIQ QIL+++ DL+   GMG++FITHD+ +V  +AD V VM  G+ VE GP  +I
Sbjct: 192 TALDVTIQVQILDLLADLKASEGMGLLFITHDLSIVRRIADRVCVMQAGEIVESGPTAEI 251

Query: 245 FANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQKPL 304
           FANPQHPYTR LL A P                     GQP  + +         D K L
Sbjct: 252 FANPQHPYTRKLLDAEP--------------------TGQPQPVSK---------DAKEL 282

Query: 305 LSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQL 364
           +  +DL V F I+K    +    + AV   S  + AGETL +VGESGSGK+T+   I +L
Sbjct: 283 IRTEDLKVWFPIQKGFLKRTVGHVKAVNPTSLSVRAGETLGIVGESGSGKTTLALAIMRL 342

Query: 365 QTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTHGL 424
             A  G + F G+   Q S  +  R+R ++Q +FQDPF +L PR T    IAE +  H +
Sbjct: 343 -IASEGRVEFQGQDLRQWSTRDLRRLRADMQIVFQDPFGALSPRMTCAQIIAEGLAIHNV 401

Query: 425 INDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEALS 484
             D+   R  V E++  VGL      RYPHEFSGGQRQR+ IARA+   PKL++ DE  S
Sbjct: 402 DQDRDP-RDLVAEVMSEVGLDPAFMDRYPHEFSGGQRQRIAIARAMVLRPKLVVLDEPTS 460

Query: 485 ALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQVF 544
           ALD+++Q QI+NL  DLQ   GLAYLFISHD+ VV  MSH++ V+  G ++E GS  ++F
Sbjct: 461 ALDMTVQVQIVNLLRDLQERYGLAYLFISHDLNVVRAMSHKMIVMKQGDVVEAGSAAELF 520

Query: 545 ETPTHDYTRRLLSA 558
             P+  YT++LL+A
Sbjct: 521 NNPSDPYTQQLLAA 534



 Score =  197 bits (501), Expect = 9e-55
 Identities = 118/271 (43%), Positives = 166/271 (61%), Gaps = 20/271 (7%)

Query: 303 PLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQ 362
           PLLSV+DL V F  R++  GK T    AV+ VSF +  GET+ALVGESGSGKS    +  
Sbjct: 13  PLLSVRDLRVSF--RQD--GKVTE---AVRGVSFSVGRGETVALVGESGSGKSVSALSTV 65

Query: 363 QL---QTAVSGEIAFNGRSYSQMSAAERFRMRQ----EVQYIFQDPFASLDPRKTVGFSI 415
            L      VSG + ++G   ++M  A    +RQ    ++ +IFQ+P  SL+P  T+   +
Sbjct: 66  SLLGDSATVSGSVTYDG---TEMVGASERHLRQVRGNDISFIFQEPMTSLNPLHTIEKQL 122

Query: 416 AEPINTHGLINDQKAVRRRVDELLERVGLSSEHAA--RYPHEFSGGQRQRVCIARALASD 473
           AE +  H  +    A R R+ +LL RVG+         YPH+ SGGQRQRV IA ALA+ 
Sbjct: 123 AESLALHQGLGGA-AARERIVDLLNRVGIRDAETRLDAYPHQLSGGQRQRVMIAMALANK 181

Query: 474 PKLIIADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQ 533
           P ++IADE  +ALDV+IQ QI++L  DL+A  G+  LFI+HD+++V +++ RV V+  G+
Sbjct: 182 PDILIADEPTTALDVTIQVQILDLLADLKASEGMGLLFITHDLSIVRRIADRVCVMQAGE 241

Query: 534 IMELGSRQQVFETPTHDYTRRLLSAVPVADP 564
           I+E G   ++F  P H YTR+LL A P   P
Sbjct: 242 IVESGPTAEIFANPQHPYTRKLLDAEPTGQP 272