Pairwise Alignments

Query, 511 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  146 bits (368), Expect = 2e-39
 Identities = 141/505 (27%), Positives = 228/505 (45%), Gaps = 52/505 (10%)

Query: 8   MTTTFVALAMAATAFTAAPAFAAGKMTISSPQDPGSWDPIDTFLVQWAAVATNIFDGLTY 67
           M T    LA+A  A   +    A  +T++   DP S DP +        ++  +FD L  
Sbjct: 1   MKTMKNKLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIR 60

Query: 68  RGPDLKLAPGLAESWEELDEGKRIRFKLRQNVKFHNGEPFNAAAVKFTFERLLGEQGAKG 127
               ++  P LAESW+ +D  + +RF LR+ VKFH+G  F A  V +TF RL      KG
Sbjct: 61  FTQKMEFEPRLAESWQRVDN-ETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESADFKG 119

Query: 128 PQRSNYVAIESVDVIDDYTVDMKLKAPDPVLLTKLAGYGGMIVP---------------P 172
                +  + S+  +DDYT+++K     P L+  +A Y   I P                
Sbjct: 120 ----IFEPLVSLTKVDDYTIEIKTAGTYP-LIENVATY---IFPMDSKFYTGTTADGKNK 171

Query: 173 AYIKEKGEDNFNLNPVGTGAFKFVSYAPKNNIKLEANPDYWGGAPK--LSELEYRFIAEP 230
           A I + G    + N  GTG F   +      ++ + NP+YW  A K  + +L    I E 
Sbjct: 172 AEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKED 231

Query: 231 STAVAELQAGRVDLVIPPTIPIGMIPVIEGDSKLQIVSVPGPTVDALRFNTRDG-ITADP 289
           +T VA L +G VD++ P  +       I+    + + ++PG  V   + N        D 
Sbjct: 232 ATRVAALLSGGVDMIAP--VSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDV 289

Query: 290 KVRKAIIMAVDRGTIVKSILAGQASEIASFQSALSFGYDPELKPLPYDPDGAKKLLAEAG 349
           +VR+AI+ A++   IV  ++ G A+  A        GY+  LKP  +D + AK+L+ EAG
Sbjct: 290 RVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKP-RFDLNKAKELMKEAG 348

Query: 350 VKPGAALQIDIRGNDATMNE--VAQVISSYLSMVGITATIKPY------------ETNVL 395
            + G  L + I  N+  +N+  +AQ  S+ LS +GI   +K                ++L
Sbjct: 349 YEKGFNLTM-IAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADML 407

Query: 396 LNDIIPQGKTGAMFQQKWGGWTFDYDNTAYSMYHSGEKWNPYDKDEKLDKLLESQRPLTD 455
           +    P  +  A F + +   T D  NT    Y+ G     Y  + ++DKL+ +    TD
Sbjct: 408 MIGWHPDTEDSANFTE-FLTMTRD-SNTGKGQYNCG-----YYSNAEVDKLVNAANEETD 460

Query: 456 RAEREKILKELGSYTAERALEIPLY 480
             +R  +LK++       A  +PL+
Sbjct: 461 LEKRSTMLKKVEEILYNEAAFVPLH 485