Pairwise Alignments

Query, 287 a.a., branched chain amino acid ABC transporter permease from Agrobacterium fabrum C58

Subject, 343 a.a., branched-chain amino acid transport system permease protein from Phaeobacter inhibens DSM 17395

 Score =  135 bits (341), Expect = 1e-36
 Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 14/291 (4%)

Query: 6   SILIDALAYGMVLFIISIGLSVTMGLMRVVNLAHGAFAMIG-----------GYLASYAA 54
           ++ +  LA GM++F+++ GL++  GLM V+N  HGAF  +G           G+L +  +
Sbjct: 48  TLTVSGLAMGMMIFLMASGLTLVFGLMDVINFGHGAFVSVGAFIGISVLLTLGHLTNAPS 107

Query: 55  HGLGL-GYAMAILVAIVGTIVIAIPLERFLYRRIYGAPELTQVLMTIGITFCIIGIANYV 113
            GL L     A+L A+  T V+    ER + + +YG   L+Q+L+T+G       +   +
Sbjct: 108 LGLNLLAILAAVLAAMAATAVMGWAFERVIVKPVYGN-HLSQILVTMGGLIIAEQLIIVL 166

Query: 114 FGPTLKTIPLPQQLAGPTDLGFRTIATHRIFAIACGLAVAGALWFTFEKTAFGIKLRAAV 173
           +GP       P+ L G    G   I  +R+  +  GLAV  A+ F   +T  G+ +RA V
Sbjct: 167 WGPEEIYFTRPEALKGALTFGDAAIEKYRLVTVGVGLAVFAAMRFVLRRTKIGLIVRAGV 226

Query: 174 DNAAMAAALGVRTEIIYAVSFAIAVGLAAMGGVI-GAELLPVEPYYALRYMVTFLVVVSV 232
            N  M AALG R  +++   F     LA +GGV+ G     +  +   + M+   +VV +
Sbjct: 227 QNGEMVAALGYRLRLVFIGVFIAGSALAGLGGVMWGLYQEVITAHMGNQAMILIFIVVII 286

Query: 233 GGAGSIPGALIACLLLGAIDTTGRYLAPEYGEFFFYLAVIVIITLFPRGLL 283
           GG GS+ G  I  LL+G +     ++ P+         ++ I+   P G++
Sbjct: 287 GGLGSVEGCFIGALLVGLLQNYIAFVEPKLALVSNIALMVAILMWRPMGMI 337