Pairwise Alignments

Query, 432 a.a., multidrug resistance efflux pump from Agrobacterium fabrum C58

Subject, 351 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  172 bits (436), Expect = 1e-47
 Identities = 125/360 (34%), Positives = 187/360 (51%), Gaps = 24/360 (6%)

Query: 59  ADAPPQATPAPAVAAPKAKKRSPLLPIFALALLVGAGWYGYNWWIDGRFMVSTDDAYIQG 118
           +DA PQA  A        KKR  LL +  L  ++  G    +    GR+M  TD+AY++ 
Sbjct: 2   SDANPQAPKANT-----RKKRGILLIVVPLLSVLAIGAVYLH---GGRYM-ETDNAYVKA 52

Query: 119 DIAVIAPKVAGYVAKVNVVENQEVKAGDPLVTLDDGDYRIAFEQADA---QIRTEQLSLK 175
           D   ++ +VAG V  + VVENQ V+ G  L  LDD  +++  ++A A   Q++T+   LK
Sbjct: 53  DKVPVSAQVAGNVDSLYVVENQRVEKGKVLFRLDDAMFKVMVDKASAKLAQVKTDLAVLK 112

Query: 176 RIDAQIIGGEAAQEQAVAQKGALDAALRGAEITQKRATELQAKDVGTVAASDNAQVALDQ 235
                     A+  +  A+    +  L  AE  QKR   L  K   + +  ++A+   D 
Sbjct: 113 ----------ASYHEKQAEITLAETKLAFAEKEQKRQENLIGKHFVSESQLEDARQNTDI 162

Query: 236 ARANVVAGEAAISSAKANVELLRAQREEAESTIRSLQLSKDKAARDLAFTVLKAPYDGVI 295
           AR N+   +  +     ++        E   +        ++A  DL+   +KAP  GV+
Sbjct: 163 ARQNIQTLQKDLHRIAESLGGSPDFPIEQHPSYLEALAQLNEAKLDLSRVEIKAPVSGVV 222

Query: 296 GNLAVQTGDLVSVGKRLASLVPMNELYIDANFKETQLARVVPGSKVRVHVDAFDDEAIEG 355
             L  + G  V+VG    +LV  + L+I+ANF ET L  V PG KV +H+D F D   +G
Sbjct: 223 SQLP-KLGQYVNVGAIALALVADHALWIEANFTETDLTHVKPGQKVNIHIDTFPDNHWQG 281

Query: 356 TVQSISPGSGSVFSMLPPENATGNFTKVIQRVPVRIVFSKEDLAKHNLRAGLSVVVDVDT 415
           TV+S+SP +G+ FS++P +NATGN+ K+ QRVPVRI      L +  LRAGLS VVD+DT
Sbjct: 282 TVESLSPATGAEFSLIPAQNATGNWVKIAQRVPVRIAIDTA-LPEAPLRAGLSAVVDIDT 340