Pairwise Alignments

Query, 260 a.a., endonuclease III from Agrobacterium fabrum C58

Subject, 232 a.a., endonuclease III from Methanococcus maripaludis S2

 Score = 59.7 bits (143), Expect = 5e-14
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 12/181 (6%)

Query: 60  FTLLVAVALSAQATDVGVNRATRALFKVAD-TPEKMLALGEEQLIGHIKTIGLYRNKAKN 118
           F + +   L+   +   V ++ + L K+ + TPE ++ L  EQL   IK  G Y  K+  
Sbjct: 58  FEVCIGAILTQNTSWPSVEKSLKNLRKLIEITPENIINLDIEQLKEAIKPSGYYNQKSVR 117

Query: 119 VIALSQMLIDNFGGEVPKTREELVTLPGVGRKTANVVMSMAFGVPTLAVDTHVFRIANRL 178
           +   S+  I      VP TREEL+ L GVG +TA+ ++  AF VP+  VD +  RI   L
Sbjct: 118 LKGFSEFFIKL--NHVP-TREELLKLNGVGPETADSMLLYAFKVPSFVVDAYTKRILINL 174

Query: 179 CLAPGKTTDEVEDRLVRIIPEQY-----LFHAHHWLILHGRYCCKARKPECERCVIADIC 233
            L  G    E  D++  +  E       ++  +H LI+        +K     C +  I 
Sbjct: 175 NLIDG---SEKYDKIKELFEENVEKNLEIYQEYHALIVEHAKNYYRKKENYITCPLLKII 231

Query: 234 K 234
           K
Sbjct: 232 K 232