Pairwise Alignments

Query, 317 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 331 a.a., DNA-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 87.8 bits (216), Expect = 3e-22
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 12/293 (4%)

Query: 21  YYVAGRTQDEIAAAMSISRQSAQRLVSLAVAERLIKVRLDHPIAACLEKAERLKEKFDLK 80
           YY  G TQ+EI+   +ISR    RL+  A  E ++++ + +      +  +RL E+F ++
Sbjct: 22  YYQDGATQEEISKKYTISRAKVGRLLKQARDEGIVEITVKYHPVFSAKIEQRLIERFGVR 81

Query: 81  YIEVVPSDPAGVSSTVGIAEAGAAEIERWLKNADPIVLAIGTGRTLKAA---VDQLPPME 137
              +    P   +    +A   +  +   LKN   +V+ +G GR + A    V  + P +
Sbjct: 82  RALIALDQPNDEAQRQQVAGLVSNYLTSTLKNG--MVVTVGQGRNVSAVAHHVGVITPRD 139

Query: 138 CPQHRIVSLTGNIGPDGSAAYY-NVIFSMADAIKARHFPMPLPVLCSSAEERELLHDQSM 196
           C   + V   G I P G      ++   +A         +  P    + E++ +    S 
Sbjct: 140 C---KFVCSIGGIHPRGGMFNADHICRQLAKKYGGSSETLYAPAYAENPEQKRVFMQNST 196

Query: 197 VRSTLALGAAANVTFVGVGELGENAPLCVDGFLGVDE-MKALMASGAVGEICGW-MYDAN 254
           V+ TL L   A++  VG+G++ EN+ +   G+   +E +++ +  G VG+  G   +D +
Sbjct: 197 VKQTLDLARKADIALVGIGDMSENSYMVDLGWFTPEEVVQSRLNQGVVGDFAGHDFFDVH 256

Query: 255 GHILEHSVNERVASVPIPS-RDTCTVIGMAQGARKNASILAALKGGLLNGLIT 306
           G I    +N+RV  + I   R    VI +A    K  ++L AL+ G ++ + T
Sbjct: 257 GRIANTVMNDRVIGLGIDEFRPIAEVIAIAAENSKPLALLGALRTGAIDVIAT 309